Lates calcarifer (barramundi perch): 108880435
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Entry
108880435 CDS
T04895
Symbol
u2af1
Name
(RefSeq) splicing factor U2AF 35 kDa subunit
KO
K12836
splicing factor U2AF 35 kDa subunit
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108880435 (u2af1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcf03041
]
108880435 (u2af1)
Spliceosome [BR:
lcf03041
]
Complex A
U2 snRNP components
U2 related factors
108880435 (u2af1)
Complex B
108880435 (u2af1)
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Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
RRM_1
zf_CCCH_4
Torus
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
108880435
NCBI-ProteinID:
XP_018527463
UniProt:
A0A4W6FFB6
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Position
LG1:15269102..15274879
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AA seq
232 aa
AA seq
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MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSAQ
SADGLTCAISDMEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRYE
EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE
LRRELYGRRRKSRHRSRSRSRERRSRSRDRGRGGGRDHERRRSRDRERSGRF
NT seq
699 nt
NT seq
+upstream
nt +downstream
nt
atggcagagtacctggcgtccatttttgggacagagaaagataaagtcaactgctcattt
tattttaaaattggtgcctgtcgacatggagaccgctgctccagattacacaataagcca
acattcagccagacaattgccctcctgaacatttaccggaaccctcaaaacagtgcccag
tccgccgatggtctgacctgtgccatcagtgacatggagatgcaggagcactatgacgag
ttttttgaggaggtcttcacagagatggaagagaaatacggagaagtggaggaaatgaac
gtatgtgacaacctcggggaccacctagtaggaaatgtgtatgtgaagttccgttatgaa
gaggacgctgagaaggctgtgatcgacctgaataatcgatggtttaatggacagcccatc
catgctgagctctctcctgtcacagacttcagagaagcctgctgtcgccagtatgaaatg
ggggaatgcactcgtggtggcttctgtaactttatgcatctgaagcccatctcacgtgaa
ctaaggagagagctgtatgggcgccggaggaagagccgtcacaggtctcggtctcgatcg
agagagagacgttctcgctccagagacagaggtcgaggaggtggccgtgaccacgagaga
cgtcgctccagagacagagagcgttcaggacgcttctga
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