Lates calcarifer (barramundi perch): 108880565
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Entry
108880565 CDS
T04895
Symbol
gfap
Name
(RefSeq) glial fibrillary acidic protein
KO
K05640
glial fibrillary acidic protein
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108880565 (gfap)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
lcf04812
]
108880565 (gfap)
Membrane trafficking [BR:
lcf04131
]
Autophagy
Chaperone mediated autophagy (CMA)
Other CMA associated proteins
108880565 (gfap)
Cytoskeleton proteins [BR:
lcf04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type III
108880565 (gfap)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Filament
Filament_head
DUF1664
DUF7491
GAS
BLOC1_2
DUF4515
TPR_MLP1_2
SKA2
Fib_alpha
Motif
Other DBs
NCBI-GeneID:
108880565
NCBI-ProteinID:
XP_018527645
UniProt:
A0AAJ7LMW8
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All DBs
Position
LG11:complement(3518002..3524983)
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AA seq
451 aa
AA seq
DB search
MESQRVQSSYRKRFGPQGSSATAVRIGNLSSGRFSWHGTPRTLTHSSPISRISLGSASAA
LLLGSPGDRLDFSADSLMKAQYKETRTNEKMEMMGLNDRFASYIEKVRLLEQQNKVLVAE
LNQLKGKEPSHLGDIYQEELRDLRRQVDGLTAGKARLEIERDNLAADVGTLKQRLQDEIG
LRQDAENNLNSFRQDVDEAALNRVQLERKIDALQDEINFLKKIHEEEQRELQDQILAQQV
HVDLDVSKPDLTAALRDIRVQYETMASSNMQETEDWYRSKFADLTDAANRNAEALRQAKQ
EANEYRRQIQVVTCDLEALRGTNESLERQLREMEDRFAMDSAGYQDTVSHLEEEIQALKE
EMARHLQEYQDLLNVKLALDIEIATYRKLLEGEESRITIPVQSFANLQFRETNLDTKTPE
AHVKRSILVRTVETRDGEIIKESTTEHKDLP
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atggagagtcagagagtccagtcttcgtacaggaagcgttttgggccacagggctcaagc
gccacagcagtcagaattgggaacctttcttctggtcgcttctcctggcatggcacccct
cgcactctcacccactccagccccatatctcggatctccctgggctcagccagcgcggcc
ctgctcctggggagccccggggaccggctggacttctcggctgactccctgatgaaggcc
cagtacaaggagactcgcaccaatgaaaagatggagatgatgggcctgaatgaccggttt
gccagctacatagagaaggtgcgcctgctggagcagcagaataaggtcttggtggcagag
ctgaaccagctcaaggggaaggagcccagccacctgggagacatctaccaggaggagctg
agagatctgcgacggcaggtggatggtctcaccgctggcaaagctcggctggagatagag
agggacaatctggctgcagatgtaggaacgctcaagcagaggttgcaagatgagattggc
ctccgacaggacgcagagaacaatttgaattccttcagacaggatgtggatgaggcagct
ctaaaccgtgtccagttagagaggaagatcgatgccctgcaggatgagataaacttcctg
aagaagattcacgaggaggagcagcgtgaattacaggaccagatcctggcccagcaggtg
catgttgacctggatgtgtccaaaccagacctgactgctgctctgagagacatcagggtc
cagtatgagaccatggccagttcaaacatgcaggagacagaggattggtaccggtccaag
tttgctgacctgacagatgcagccaatcgaaacgcagaagccttgcgccaagccaagcag
gaggccaacgaataccggcgccagatccaagtggtgacctgtgacctggaggctctccgt
gggacaaatgagtctctggaacgccagctccgggagatggaggaccgcttcgccatggac
agtgctggttaccaggatacagtgagccatctggaggaggagatccaggcgctgaaggag
gagatggcgaggcacctgcaggagtaccaggacctcctcaacgtcaagctggccctggat
attgagattgccacctacaggaagctgctggagggagaggagagcaggatcactattcca
gttcagagctttgccaacctgcagtttagagaaactaatctggacaccaaaaccccagag
gcccacgtgaagaggagcatcctggttcgaactgtggagaccagagatggggagatcatt
aaggaatcaaccactgaacacaaagatcttccttga
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