Lates calcarifer (barramundi perch): 108880602
Help
Entry
108880602 CDS
T04895
Symbol
coro1a
Name
(RefSeq) coronin-1A isoform X1
KO
K13882
coronin-1A
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04145
Phagosome
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
108880602 (coro1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108880602 (coro1a)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
lcf04812
]
108880602 (coro1a)
04147 Exosome [BR:
lcf04147
]
108880602 (coro1a)
Membrane trafficking [BR:
lcf04131
]
Endocytosis
Phagocytosis
Coronins
108880602 (coro1a)
Cytoskeleton proteins [BR:
lcf04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
108880602 (coro1a)
Exosome [BR:
lcf04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
108880602 (coro1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1899
WD40_4
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
WDR55
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
EIF3I
Beta-prop_EIPR1
Beta-prop_EML
Trimer_CC
ANAPC4_WD40
WDCP
Beta-prop_WDR75_1st
WD40_RFWD3
WD40_MABP1-WDR62_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR35_TULP_N
NBCH_WD40
Beta-prop_HPS5
Beta-prop_NUP159_NUP214
TolA_bind_tri
DUF7310
DivIC
TSC22
DUF6779
Beta-prop_SCAP
BLOC1_2
FlaC_arch
Motif
Other DBs
NCBI-GeneID:
108880602
NCBI-ProteinID:
XP_018527696
UniProt:
A0A4W6CI88
LinkDB
All DBs
Position
LG11:complement(3316457..3329733)
Genome browser
AA seq
456 aa
AA seq
DB search
MSRRVVRTSKFRHVFGQAVKADQCYDDIRISQMTWDSNFCSVNPKFVAMIVDASGGGAFM
VLPLSKTGRIDMSYPTVCGHTGPVLDIEFCPHNDNIIASGSEDCSVMIWEIPDSGLTSPL
TDPVVKLEGHSKRVGILSWHPTAHNVLMSAGCDNVVILWNVACGEAVVRIDTVHTDLIYS
ACWNRDGSKILTSCKDKTMRILDPRKGTVLIEKEKPHEGSRPVRAVFVSDGKILSTGFSR
MSERQVALWDPNNFKEPLTLQELDTSSGVLLPFFDPDTGIVYLCGKGDSSIRYFEVTDEA
PYVHYLSMYSSKESQKGMGYMPKRGLEVNKCEIARFYKLHERKCEPIVMTVPRKSDLFQE
DLYPDTIGPEPSVEADEWFQGKEAQPILISLKDGFVATTKAKEFKVHKSLLKTTTASAGS
QQDSSGEVQSLRNEVKDLKAAIEELTKRVRELESKH
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgtctaggagggttgtgaggaccagtaagttccgtcacgtctttggccaggctgtgaaa
gctgaccaatgctacgatgacatccgaatctcccagatgacctgggacagcaacttctgc
tctgttaaccccaagtttgtggccatgattgtggatgccagcggtggaggagccttcatg
gtgctgcccctgagcaagacggggcgtatcgacatgtcctaccccactgtgtgcggccac
acaggtccggtcctggacatcgaattttgtccccacaacgacaacatcatcgccagtggc
tctgaggactgcagtgtcatgatctgggagatcccggacagcgggctgacctcccctctc
acagatcctgttgtcaagctggaaggccactccaaacgtgttggcatcctgagctggcac
cccaccgcccacaatgtgctgatgagtgcaggctgtgataacgtggtgatcctgtggaac
gtggcctgtggggaggcggtggtgaggatcgacaccgtacacaccgacctcatctacagc
gcctgctggaacagggacggctccaagattctcacctcctgcaaggacaagaccatgcgg
atactggacccacgcaagggcaccgtcctcatcgagaaggagaagcctcatgagggctcc
aggcctgtcagggcggtgttcgtgtccgacggcaagatcctcagtaccggcttcagtcgc
atgagtgagaggcaggtggcgctgtgggatccgaacaactttaaagagccgctgaccctg
caggaactggacaccagtagcggcgtccttctgccattttttgacccagacactggcatc
gtctacctctgtggcaagggggacagcagtatccgttactttgaggtgacagatgaagct
ccttatgtccactacctctccatgtacagcagcaaggagagccagaagggaatggggtac
atgcccaagagaggcctggaagtcaacaaatgtgaaatcgcgaggttctacaaactccat
gagaggaaatgtgagcctatagtcatgacggtgccacgtaagtctgacctgttccaggag
gatctgtacccggacaccatcggccccgagccctcggtggaagctgatgagtggtttcaa
ggaaaggaagcccagcctatcctgatatctctaaaggacgggtttgtagcaaccaccaaa
gccaaggagttcaaagttcacaagagtctcctgaagaccacgactgcttctgctggtagt
caacaggacagcagtggggaggttcagtccttgaggaatgaggtgaaggacctcaaagca
gcgatagaggagctgaccaagcgtgtgagagagctggagagcaagcattaa
DBGET
integrated database retrieval system
