Lates calcarifer (barramundi perch): 108880634
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Entry
108880634 CDS
T04895
Symbol
cacna1ia
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1I
KO
K04856
voltage-dependent calcium channel T type alpha-1I
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04010
MAPK signaling pathway
lcf04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
108880634 (cacna1ia)
04020 Calcium signaling pathway
108880634 (cacna1ia)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lcf04040
]
108880634 (cacna1ia)
Ion channels [BR:
lcf04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
108880634 (cacna1ia)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
TMEM208_SND2
ETRAMP
Motif
Other DBs
NCBI-GeneID:
108880634
NCBI-ProteinID:
XP_018527744
LinkDB
All DBs
Position
LG11:complement(12932310..13003487)
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AA seq
2296 aa
AA seq
DB search
MYSMCMAVYLFSAVMLLNPSPVDTWFERISIMVILLNCVTLGMYQPCENIDCTSDRCQIL
QAFDAFIYIFFALEMVVKMVALGIFGRRCYLGDTWNRLDFFIVMAGMVEYSLDLQNINLS
AIRTVRVLRPLKAINRVPSMRILVNLLLDTLPMLGNVLLLCFFVFFIFGIIGVQLWAGLL
RNRCYLEENFTLSSGMTLPAPYYQPEEDDERPFICSLASDNGIMSCTDVPARREGGRTCC
LDREDALHRQALGLSPEPLANGSGAGEAMGLCINWNQYYTRCHTGNSNPHKGAINFDNIV
YAWIVIFQVITLEGWVEIMYYVMDAHSFYNFIYFILLIIIGSFFMINLCLVVIATQFSET
KQREHQLMQEQRAQCLSSSTLASMAEPGDCYEEIFQLVCHVLRKAKRRSAALYYTLRGKP
PPAGGGRGNRRGGGNVNGERHHSRHPRLSQCPHQSKQDHGSQPLANSISLSVPQNPEDCP
ICALSLKEGARAVGDSANEEEDEEDAVKETGKEENHLEERGDGERKRKRTCFGHCKDIWN
DMRRKLWGIVESKYFSRGIMIAILINTISMGIEHHNQPEELTNVLEICNIVFTSMFTLEM
ILKLTAFGFFEYLRNPYNIFDGIIVIISVCEIIGQADGGLSVLRTFRLLRVIKLVRFMPA
LRRQLVVLMKTMDNVATFCMLLMLFIFIFSILGMHIFGCKFSLKTEAGDTVPDRKNFDSL
LWAIVTVFQILTQEDWNMVLYNGMASTSPCAALYFVALMTFGNYVLFNLLVAILVEGFQA
EGDANRSYSDDDRSSCNFEENDKQKETLHLSDPKICTLTPNGHLDLSSLPAGLFPGERLT
FALGSRKNSVISLGRANLEQRAVYPGRGYHNWGRPLPPQPQALWARRSSWNSLGGCRPCS
SSSPSTSPVFTPTSTRPFYGYGLGGLGGVVGGSLRIRGPRASSSPRRHLHQVHPDEEESL
LSPPAVAPHSLHLPHPMLPGHFVPRRDRRALSLELPHLLQVPGPPHPPPPPHHPLPSMSL
HAHHRKKSFSGVGGGGLDSLGGLGGVHQDCNGKTPLSQLLQPPPRHQSEQAGGVNPQSQL
MADVFPQVNTRSKDREDLDDDIDYSLCFRIQKMLEAYRPDWCETREDWSVFLFSPQNKFR
QMCQSIIAHKLFDYVVLAFIFSNCITVALERPKILQGSLERVFLTISNYIFTAIFVGEMT
LKVVSMGLYMGEQAYLRSSWNILDGFLVFVSLVDIVVSMAGGAKILGVLRVLRLLRTLRP
LRVISRAPGLKLVVETLITSLKPIGNIVLICCAFFIIFGILGVQLFKGKFFYCFGPDVKN
ITNKSDCLQANYKWVHHKYNFDNLGQALMSLFVLASKDGWVNIMYHGLDAVGVDQQPVTN
NNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQHQEVEEAKRREEKRQRRMEKKRR
KAQKLPYYSSYGHMRLMIHTLCTNHYLDLIITFIICINVITMSLEHYNQPHSLDLALKYC
NYFFTSTFVLEAVLKLIAFGFRRFFKDRWNQLDLAIVLLSVMGITLEEIEISAALPINPT
IIRIMRVLRIARVLKLLKMATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFG
ELVCNEDYPCEGMSRHATFENFGMAFLTLFQVSTGDNWNGIMKDTLRECPPDHGTDVDYA
CNPSLQFISPMYFVSFVLTAQFVLINVVVAVLMKHLDDSNKEAQEEAEMDAEIELELAQG
TLCCMGAPSCGGGGVEKGLVAAGSGPGGTAGGRERGDARGEKGEGGRKMRHAAAAAHQGP
YNSRNSSRSLYSPAQESQWLDSVSLLIKDTLEGEMLMIDNLSGSVFHHYSSPPPICKDCK
GHPQEQIRMAEIEQASLKSEQLSDKSSSPALPDDLSLDEHTAYQLLAREGKGRYSSDSRS
SEEAGGGGHQTQTVVQSQVQGLGLPCRALCTGVEMETALQEMEMQTHQPHMCSPHCSPGG
VSSSSNKDRNREGEGGASGISPLFHLPAEFFHPAGAAIPAPPRSRSLRLTRGLRLTSPAS
WASLRSPGAHSKMLCMQYPSHSDSSLATGSSEGSLQTTLEEGLSFSISPPQNLELPLPTA
PLPLPLPEDRTILSSPVQTLRPRPSPSSALTLQATRGHQRSQSSGRGSTSPGYTRDDSID
PSDEDLGIGIGSSIGGCGSSQAGNSEHLSETLSSLSLTSLLSPSSLVYPGGAVKKCNSTG
SLDQGGMLLSSRGKEGRREILGLELMDPQGLLANPWTGVLVDTRRGEGRGEIGDGEQGLK
GKSSSQTTVGPCRKNR
NT seq
6891 nt
NT seq
+upstream
nt +downstream
nt
atgtacagtatgtgtatggctgtgtatcttttctcagctgtaatgctccttaaccccagt
cctgtcgatacatggttcgagaggattagcatcatggtgatcctgctcaactgtgtgaca
ctgggcatgtaccagccctgtgagaacatcgactgtacctcggaccgctgccagatactg
caggcctttgatgcattcatctacatcttctttgcattggagatggttgtaaagatggtg
gcacttgggatctttggccgccgctgttacctgggagacacctggaacaggctagacttc
ttcatcgtcatggctgggatggtagagtactctctggacctgcagaatattaacctgtcg
gccatccggacggtgcgggtccttcgtcctctcaaagccatcaacagagtgccaagtatg
cgaatcctggtgaacctgttgctcgacactctacccatgctgggcaacgtgctgctgctc
tgcttcttcgtcttcttcatcttcggcatcatcggcgtgcagctgtgggcggggctgctg
cggaaccgctgctaccttgaggagaacttcaccttgtcatcaggtatgactctgccagca
ccatactatcagcctgaggaggacgatgagcgccccttcatctgctccctggcgtctgat
aacggcatcatgtcgtgcactgatgtgccggcgaggcgcgaaggaggccgcacgtgctgc
ttggacagagaggatgcactccacagacaggctctgggcctgagtcctgaaccgttggcc
aacggcagtggtgctggcgaagcaatgggactttgcatcaactggaaccagtattacacc
cgctgccacacagggaatagtaacccccataaaggtgccatcaactttgacaacattgtc
tacgcctggattgtaatttttcaggtgatcactctggagggctgggtagagatcatgtat
tatgtaatggatgcccactccttctacaacttcatctacttcatcttactcatcattatc
ggttctttcttcatgatcaacctgtgcctagtggtcattgccacccagttctcagagacc
aaacagcgggaacaccagctgatgcaggagcaaagggcacagtgcctgtcctcctccacc
ttggccagcatggctgagccaggggattgctatgaggagatcttccagctggtctgccat
gtcctccgcaaggctaagaggagatcagcagctctctactacacgctgaggggcaagccc
ccgccggctggtggaggcaggggtaacaggcgcggtggagggaacgtgaacggagagcgg
catcattcgaggcacccaagattatcccagtgtccacaccaaagcaaacaagaccacggc
tctcagccactagccaactccatcagtctgtctgtccctcaaaatcccgaggactgccct
atatgtgcgctgtcgttgaaagagggggcaagagccgtgggagactctgccaacgaggag
gaagacgaggaggatgctgtgaaagagacgggcaaggaggagaaccacttagaggagagg
ggagacggggagaggaagaggaagaggacgtgctttggacattgtaaggacatttggaat
gatatgaggaggaagctttggggcattgtggagagcaagtacttcagcaggggcattatg
atcgctattctcatcaacaccatcagcatgggcatcgagcatcataaccagcccgaagag
ctgaccaatgtcctggagatctgcaacattgtcttcaccagcatgttcacactggagatg
atcctcaagctgacggcttttggcttctttgagtacctgaggaacccgtataacatcttt
gatggcatcattgtcatcatcagtgtgtgtgagatcatcggccaggcagacggcggtctg
tcagtgctgaggaccttcaggctactgagggtcattaagctggtaaggttcatgcctgcg
ctgaggcggcagctggtggtgctgatgaagacgatggacaacgtggccaccttctgtatg
ctgctcatgctcttcatcttcatcttcagtatccttgggatgcatatatttggttgtaag
ttcagtctgaagacagaggcaggagacacagtgcctgacaggaagaactttgactccctg
ctctgggccattgtcacagtctttcagattctgactcaggaggactggaacatggtactt
tacaatggcatggcctccacctcgccctgtgctgctctctattttgtggctcttatgacg
tttggaaactatgtgctcttcaatttactggttgccatcttggttgagggtttccaagct
gagggtgacgcaaaccgctcatactcagacgatgacaggtcttcttgtaattttgaggag
aatgataagcagaaagaaactctgcatctctcagacccaaagatctgtacactgacccca
aatgggcacttggacttgtcctcgctgcctgcaggtctgtttccaggagagaggttgacc
tttgctcttggctccaggaagaacagtgttatttctcttggcagggccaacctggagcag
agggctgtgtatccaggtcggggttaccacaactggggccgcccactgcctccccagcct
caggctttgtgggcccgtcgttccagctggaacagtctgggaggctgccgcccttgttct
tcctcatctccctccaccagtccagtcttcacccccacctcaaccaggcccttctacggc
tacggcctgggtggtctgggaggggtggttggagggagccttcgtatccgcggtccccgt
gcctcctcatccccgcgccggcacctccaccaggtccatccagatgaggaagagtctctt
ctctcccctcctgctgtcgcccctcactctctccaccttccccatcctatgctcccaggc
cactttgtgcccaggagggaccgcagggctctatcgctagagctgccccacctgctgcag
gtcccaggacctccacaccctccgccgccgccacaccacccactgccctccatgtcgctc
cacgctcaccacaggaagaagagcttctctggagttggtggcggtggacttgacagtctg
ggtggcttaggaggggtccaccaagactgtaatgggaagactccactgtctcagcttctc
cagccacctccaagacaccagagtgagcaggcaggaggggtgaacccccagagtcaactg
atggctgatgtcttcccccaggttaacactcgcagcaaggaccgggaggacctggacgat
gacattgactatagcttgtgcttccgcatccagaagatgttagaggcgtacagaccagac
tggtgtgagactagagaggactggtctgtcttcctgttctccccacaaaacaagttcaga
cagatgtgccagtccatcattgcccataagctgtttgactatgtggtgctggcattcatc
ttctccaactgcatcacagtagctctggagaggcccaagatattacagggcagcctggaa
agagtctttctcaccatctccaactacatctttactgccatctttgtgggcgagatgaca
ctcaaggtggtttccatgggtctgtatatgggggagcaggcttatctgcggagcagctgg
aacattctggatggcttcctggttttcgtgtctttggttgacattgttgtgtccatggcg
ggtggggccaagatcctgggtgtgctcagagttctcaggctgctcagaacattgcgtccc
ctcagggtgatcagcagagctccaggtctgaagctagtggtggaaaccctcatcacttct
ctcaaacccatcggcaacatcgtcctcatctgctgtgctttcttcatcatctttggcatt
cttggggtacagctgtttaaaggcaagttcttctattgcttcggccctgatgtcaaaaac
atcaccaacaagtctgactgtctgcaagccaactacaagtgggttcaccataagtacaac
ttcgacaacctgggacaggctctgatgtccttgtttgtactcgcctctaaggatggttgg
gttaatattatgtatcatggcctggatgctgtgggtgtggaccaacagccggtgaccaac
aacaacccgtggatgctgctgtatttcatctccttcctcctcatcgtcagcttcttcgtc
ctcaacatgttcgtcggcgtggtggtggagaactttcacaagtgccgtcagcaccaggag
gtggaggaggccaagaggcgagaggagaagcgtcagcggcgcatggaaaagaagaggagg
aaagcccaaaagctgccctactattccagctatggccacatgcgcctgatgatccacaca
ctgtgcacaaaccactacctggacctcatcatcaccttcatcatctgcatcaatgtcatc
accatgtccctggagcactacaatcaacctcactctttggatctcgccctgaagtactgc
aactatttcttcacctccacttttgtgctggaagcagtactcaaactcatcgccttcggc
tttcgccgcttcttcaaagacagatggaaccagttggacctggccatcgtgcttttgtca
gtgatgggcatcaccctggaggagatcgagatcagtgctgccctgcccatcaaccccact
atcatcaggatcatgagagtactgaggatcgcacgagtgctgaagctgctgaagatggcg
acaggaatgagagccctgttggatacggtggtccaagccctgcctcaggtgggtaacctg
ggcctgctcttcatgctgctgtttttcatctacgccgccttaggagtagagctttttgga
gaacttgtttgcaatgaagactacccatgtgagggtatgagtcgtcacgctacctttgag
aactttggcatggccttccttaccttgtttcaagtctccacgggcgacaactggaatggc
atcatgaaggacacattgcgggagtgcccaccagaccacggcaccgatgtggactatgcc
tgcaatccgagccttcagtttatctcgcccatgtactttgtctccttcgtgctcaccgcc
cagttcgtgctcatcaacgtggtggtggccgtgctgatgaagcacctggacgactccaac
aaggaggcccaagaggaggcggagatggatgcagaaattgagctggagctggcccagggc
accctctgttgcatgggcgcccccagttgtgggggtgggggggtggaaaaaggactagtc
gccgccggatcggggcccgggggtacagcaggaggaagggagaggggagatgccagagga
gagaagggggaaggaggaaggaagatgcggcacgcggcagccgctgcgcatcaaggacca
tacaactcccgcaactccagccggagcctgtactcaccagcacaagagagccagtggctg
gacagcgtatctctcctgatcaaggatacgttagagggggagatgctgatgatcgacaac
ctctccggctctgtcttccaccactactcctctcctccacccatctgcaaagactgcaag
ggccacccacaagagcaaatcaggatggcggagatcgagcaggcgtcgctgaagtcggag
caactgtcagacaagtcctcatcccccgccctgccggatgacctcagcctggacgaacat
actgcctaccagctgctggcacgagagggcaagggaaggtacagcagtgactcccgcagc
tcagaggaggccggaggtggaggccaccagacgcagactgtggtgcagagccaggtgcag
gggcttggcctgccctgcagggccctctgcactggtgttgagatggaaactgcactacag
gagatggaaatgcaaacacaccaaccacacatgtgctcacctcactgcagccctggtggt
gtgtccagcagcagcaacaaggacagaaacagagaaggagagggaggagccagtggcatt
tctcctctcttccatctgcctgcagagttcttccaccctgcaggagcagccatcccagca
cctccccgcagtaggagcctaaggttgacaaggggccttaggctgacctccccggcctcc
tgggcttcactccgctccccgggagcccatagcaagatgctctgcatgcagtacccctcc
cacagtgactcatcccttgctacaggcagctctgaaggcagcctccagaccaccctggaa
gaaggactgagcttcagcatctctccgccgcagaacttggagctgccattgccgacagcc
cccttaccgctcccgttgcctgaagacaggactatcctttcctccccggtccagaccctg
agaccaaggccgagcccctcatcagctctaaccctccaggccaccaggggccaccagcgg
agccagagcagcgggcgaggtagcacaagcccaggctacacccgcgacgactcgatcgac
ccttccgatgaggacctgggtataggcattggatcgtccatcggcggatgtggctccagc
caagcgggaaacagtgaacacttgtcagagacactgagcagcttatcgctgacatcactg
ctgtcgcccagctccctggtgtacccgggaggagcagtgaagaagtgcaacagcacagga
agcctggaccaaggggggatgttgctgtcatcccggggcaaggagggccgcagggagatt
ctgggcctggagcttatggacccccagggcctcttggccaacccctggacaggggtatta
gttgatacaagaagaggagagggaagaggggaaataggagatggagagcaaggactcaaa
gggaagagctcaagccaaacaacagtagggccttgccggaaaaacagatga
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integrated database retrieval system
