Lates calcarifer (barramundi perch): 108880636
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Entry
108880636 CDS
T04895
Symbol
spop
Name
(RefSeq) speckle-type POZ protein isoform X1
KO
K10523
speckle-type POZ protein
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
108880636 (spop)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108880636 (spop)
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
108880636 (spop)
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GFIT
Motif
Pfam:
MATH_2
BTB
MATH
BACK_BPM_SPOP
BTB_KLHL33
Motif
Other DBs
NCBI-GeneID:
108880636
NCBI-ProteinID:
XP_018527742
UniProt:
A0AAJ7LMZ7
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Position
LG11:3638986..3723936
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AA seq
387 aa
AA seq
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MSRVPSPPSPAEMSSGPVAESWCYTQIKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSG
ANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCPKSEVRAKFKFSILNAKGEETKAMESQ
RAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVK
VPDCRLAEELGDLWENSRFTDCSLCVAGQKFQAHKAILAARSPVFSAMFEHEMEESKKNR
VEINDVEPDVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCTSLSVE
NAAEILILADLHSADQLRTQAVDFINYFSPSPGVVPEWASSPSLPLFTPIFIPFPPSPSY
SPLSPSPVLCLRACVCLKMLSNADFCP
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
atgtccagagtcccaagccccccttccccagcggaaatgtccagcggccctgtggctgag
agctggtgttacactcagatcaaagtggtgaagttctcctacatgtggaccatcaacaac
ttcagcttctgtcgtgaggagatgggagaggtcatcaaaagctccaccttctcctcagga
gccaacgacaaactcaaatggtgtttgcgtgtgaatcctaaaggtctggatgaggagagc
aaagactatctgtcactttacttgctcttagtcagctgcccaaagagcgaggttcgcgcc
aagtttaagttttctatcctcaatgccaagggagaagagaccaaagccatggagagccag
agggcataccgctttgtccaggggaaggactggggtttcaaaaagttcatcaggagggac
ttcctgctggatgaggccaacggtctgctgcctgacgacaaactgacgcttttctgtgag
gtgagtgtggtgcaggactctgtgaacatctcaggccagaacacaatgaacatggtgaag
gttcctgactgcaggctggctgaggagctcggagatttgtgggaaaactcaagattcact
gactgctccctgtgtgtcgctggccagaaattccaggcacacaaagccatcttggcagct
cgctcgccggtgttcagtgccatgtttgagcacgagatggaggagagtaagaagaaccgt
gtggagataaatgacgtggagccagatgtcttcaaagagatgatgtgcttcatctacaca
ggcaaggcccccaacctggacaagatggctgatgacctgctggctgcagctgacaagtat
gcactggagaggctgaaggtgatgtgtgaggacgctctgtgcaccagtctgtctgtggag
aacgccgcagagatcctcatcctcgccgacctgcacagcgctgaccagctcaggacgcag
gctgtggacttcatcaactacttttctccatctcctggcgttgttcccgaatgggcttca
tctccctccctccctctgttcactcccatcttcattccttttcctccttctccttcctat
tctcccctctctccctctcctgttctgtgcttaagagcttgtgtgtgcctaaagatgtta
agtaatgcagatttctgcccctaa
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