Lates calcarifer (barramundi perch): 108880713
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Entry
108880713 CDS
T04895
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108880713
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108880713
03036 Chromosome and associated proteins [BR:
lcf03036
]
108880713
Enzymes [BR:
lcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108880713
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
108880713
mRNA degradation factors
5'-3' decay
Decapping complex
108880713
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Gene silencing
piRNA pathway
108880713
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
108880713
NCBI-ProteinID:
XP_018527883
UniProt:
A0A4W6BPU0
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All DBs
Position
LG15:complement(8839984..8847567)
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AA seq
488 aa
AA seq
DB search
MATARTANPAPMIGLNKAANGQFRGQTKPAGPQSGLLATVQQSGDPQKRSSIPQNSGGIR
FGDDWKKCLELPPKDTRLKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPVQEESI
PIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDHIQAMVLVPTRELALQMSQISIQL
SKHLGGVKVMATTGGTNLRDDIMRLDEIVHVVIATPGRILDLIKKGVAKVNKTQMMVMDE
ADKLLSQDFVVLIEDIISFLPKDRQILLYSATFPISVQKFMSKHLQKPYEINLMEELTLK
GITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAK
MMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR
FGHLGLAINLITSDDRYNLKTIEDQLVTDIKPIPSSIDKSLYVAEFHSVDPDDDDNDGEL
KNKELGAA
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atggctacagcaagaacagcaaacccagcaccaatgattggattgaacaaagcagcaaat
gggcagttcagaggacagaccaagccagctggaccacagtcaggactccttgcaactgtc
caacagtccggtgatccccagaaaaggagcagtattcctcagaacagtgggggcatcagg
tttggggatgactggaagaagtgcctggagcttcccccaaaagacaccaggttgaaaact
tcggatgtgacatcaactaagggaaatgaatttgaagactactgcctaaagcgggagctt
ctaatgggaatctttgagatggggtgggagaaaccctcccctgtccaggaggaaagtatt
cccattgccctgtcaggcagggacattttggctcgggccaagaatggcacaggaaaaagt
ggagcttacctcattcctttgctggagaggatagacctgaagaaggatcacatccaggca
atggtgttggtgccaaccagagagttggcgctgcagatgagccagatcagcattcagctc
agcaagcacctaggaggggtcaaggtcatggctaccacaggtggcacgaatttgagggat
gacatcatgcgtcttgatgagatagtgcatgtagtgattgctacgccaggcaggatcctc
gacctgattaagaagggtgtggcaaaagtgaataaaacccaaatgatggtgatggatgag
gcagataagctgctgtcccaggactttgtggtcctgattgaagatattatcagcttcttg
ccaaaggatcgtcagatcctactttactctgccaccttccccatcagtgtgcagaaattc
atgagcaaacacctgcagaagccttatgagatcaacctgatggaggaactgaccctgaag
ggcatcacccagtactatgcctatgtgactgaaagacagaaggtccactgtctcaacacg
ctcttttctaggcttcagatcaatcagtctatcatcttctgtaactccacccaaagggtt
gagcttctggcaaagaaaatcacccaactgggctattcgtgcttctacattcatgcaaag
atgatgcaggagtacaggaaccgtgtgttccatgacttcaggaatggattgtgcagaaac
ctggtctgcacagacctgttcactcggggaattgacatccaggcagtaaatgtggtcatc
aattttgacttccccaaaaacgcagagacctacctgcaccgcattggcagatcagggcgt
tttggtcacctgggtctggccatcaatctgataacttcagatgaccgctacaacctgaaa
actatcgaggatcagctagttactgacatcaagcccatccccagcagcatcgataagagc
ctgtacgtggcagagtttcattctgttgacccagatgatgatgacaatgacggagagctc
aaaaacaaggaactgggagcagcctga
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