Lates calcarifer (barramundi perch): 108880762
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Entry
108880762 CDS
T04895
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 42 isoform X1
KO
K11855
ubiquitin carboxyl-terminal hydrolase 36/42 [EC:
3.4.19.12
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
lcf01002
]
108880762
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108880762
Enzymes [BR:
lcf01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
108880762
Peptidases and inhibitors [BR:
lcf01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
108880762
Ubiquitin system [BR:
lcf04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
108880762
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
Motif
Other DBs
NCBI-GeneID:
108880762
NCBI-ProteinID:
XP_018527975
UniProt:
A0AAJ7PJE0
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Position
LG23:4657321..4668135
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AA seq
1220 aa
AA seq
DB search
MTIVDRSSEKSDHESVGCKRSPFTSGDVGMDGSCSSSWAVGPTMPSDSPRLKAPGGCLGP
TPGAAIYNSTPSSVDRPKEQVISSGDGIDLPQKVLFPPERLNLKWTQVHRIGAGLQNMGN
TCFLNSALQCLTYTPPFANYMLTREHSKTCHEPGFCMMCTMQNHIIQVFANSGNVIKPIG
VLNELKRIAKHFRYGSQEDAHEFLRYTVDAMQKSCLPGTKLDRQTQATTFIHQVFGGYLR
SRVKCLNCKAVSDTFDPFLDITLEIKTAPSVSKALEQFVKPEQLDGENAYKCTKCKKMVT
ASKRFTIHRSSNVLTLSLKRFANFSGGKITKDVKYPEYLDLRPFMSQSQGESQVYGLYAV
LVHSGFSCHAGHYFCYIKASNGQWYQMNDSSVSVSDIRSVLNQQAYVLFYIKSSDVKKAG
DYSHMSHNPGIPGQSSPRPVVIPRINTTVHHNNIGFIGPQLPPHMSKSSLHVNGNGSLRD
YPTSSKPSTSSSVVGKPSHGLASSSSISHSISRPTMIPDHDKRQKLSFYIGQGKPSRPSS
SSSSSSSSYSQPSSASSSSSSSTSLSSSQSTSDVHSDVRFVPRQLNHVNGTSCSNGDHHT
GGNGASFLVPYGQESSEESDQENCGALDNGCFSKSHLNGNNRAGDVFDKSPKATNGEAGV
HHNGNGLNGSAYGVTKSGQNGHHYGQHKVNGHNTSDKISGSNHGSLSSVATVAANGVDGD
HSQTSREAHNSASSQASSSQSIHSAASESQHLSTLHTRAKTVSEPPPQHTASSAASTPPS
ATATKTHPVASRESNSSSHHGNPAALSTLPDCSQSTNGASAASQKVSISGDEAKDLPQTN
GPSTGTEGRTDAKEQRQFKPSSRGNERQSSRDRERDRPRSDWSRDRDRHYRDRSQERESD
NDRHRYRRDYRDHRHHHRSYRDRLPPHDRYYRDWDSERRYERTVHHPRERDRDRCSHHYH
HYHHHRSREDWDGERRGHGHSYREDSHSRWRWQQESRESRGAKDKSNGRERNYHSSKEES
SSPARMPETSSKSKGTPPQVSLSLSGSAPDREDHKRTADNLSKDKDESPEARHSKKHKKS
KKKKKSKDKDRHRESRSSDGDSDRAAEIKKKKKKKRRQRDSEAEQHSPGAAHDHKNRSSE
ERESRKRRHHDTKDAKHDNGLSPEKRRRVDDADGSSNHLPPSHHTSPTNGSTHRHLNGYT
GNGYSRTNGDSHGFSSGLKH
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atgaccatagttgacagatcttcagaaaagtctgaccacgagtcagtcgggtgtaagcga
tcccccttcaccagtggagacgtggggatggacggcagctgttccagcagctgggcagtg
ggccctaccatgcccagtgactctccgaggcttaaggctccaggaggctgcctgggcccg
acacctggagctgccatctacaacagtaccccttcctctgtggaccggcccaaggagcaa
gtgataagcagtggtgacggcattgacttgccccagaaggtcctcttccctccagagcgg
ctcaacctgaagtggacccaggttcaccgcattggtgcaggcctgcagaacatggggaac
acctgcttccttaactcagccctgcagtgtctcacctacacccctccatttgccaactac
atgctgacacgggagcactctaaaacatgtcatgagccagggttctgtatgatgtgcaca
atgcaaaaccacatcattcaggtttttgctaactctgggaatgtcatcaagcctattggt
gtgctcaatgagctgaaaaggatagcaaagcacttccgctatggaagccaagaggatgcc
catgagttcctgcggtacacagtggatgctatgcaaaagtcctgcttacctggaaccaaa
ttggacaggcaaacacaggcaaccactttcattcatcaagtatttggcgggtacctgagg
tccagagttaaatgtttaaactgcaaagcagtctcagatacatttgatccttttctggat
attactctggaaattaagacggctcccagtgtgtccaaggctctggagcagtttgttaag
ccagagcagcttgatggagaaaacgcctataaatgcaccaagtgcaaaaaaatggtcaca
gcctcaaagagatttaccatccaccgcagctctaacgtgctcaccctctcactcaaacgc
tttgcaaacttcagtggtggcaaaattacaaaggatgtgaaatatccagagtacctggac
ctgcggcccttcatgtctcagtcccaaggagagtcccaggtctatgggctgtatgctgta
ctggtccactctggattcagctgtcacgctggacactacttctgctatattaaggcaagc
aatggtcagtggtatcagatgaacgactcctctgtgtctgtcagtgacatcaggtctgtt
ctcaaccagcaggcctatgtcctcttctacatcaagtccagtgatgtgaaaaaagcaggg
gactacagtcacatgagccataacccaggaatacctggtcagtcatctccacgaccggtg
gtgatcccacgcatcaacaccaccgtccaccacaacaacattggcttcataggtccacag
ctgcccccacacatgagcaagagctctctccatgttaatgggaatggatctctgagagac
tatcccacaagctccaagcccagcaccagcagcagtgttgtgggaaaacctagccatgga
ctggcctcttcctcttccatctcccactcaatcagccggcccacaatgatcccagaccac
gacaagcgccagaagctttcattctacatcggacaaggcaaaccgagccgcccgtcctcc
tcctcctcctcctcctcctcctcttacagccagccatcctctgccagcagcagctcctcc
tcctccacctctttatcctcctcacagtctacctcagatgtccactcagatgttcgcttt
gttccacgtcagcttaaccacgttaacggcacgtcttgcagcaacggggatcaccacacc
ggaggcaatggagcatcattcctggtgccgtacggccaagagtcctcagaggaatcagac
caggagaactgtggtgctctggataacggctgtttttccaagtctcaccttaatggaaac
aacagagcaggagatgtctttgataagtctcctaaagctacaaacggagaggcaggagtg
caccataatggtaatggattaaatggctcagcctatggtgtcactaaatcaggccaaaac
gggcaccattatggacaacacaaagtcaatggacacaacacctctgacaagatctctggc
agtaatcatggcagtttgtcctctgtggctaccgtggctgctaatggagtagatggtgac
catagccagacaagcagagaggcacataattcagcctcatcgcaggccagttcttctcag
agcatccattctgctgccagtgaaagccagcacctctccactcttcacacaagggctaaa
actgtgtctgaacccccgcctcagcatacagcgtcctctgctgctagcactccaccttca
gctactgccacgaagacccatcccgtcgcatctagagaatctaattcttcttcacatcat
ggcaaccccgcggccttatccaccctgccagactgctcccaaagcaccaatggggcatct
gctgcttcacagaaggttagcataagcggggatgaagccaaggatctaccacagaccaat
ggaccgtcaacagggactgagggacgtacagatgctaaggagcagcgccagttcaagccc
agttccagaggcaatgaaagacaatcttccagagacagggagagagacagacctcgctct
gactggagcagagacagggacagacactacagggacaggagtcaggagcgagaaagtgac
aatgaccgtcatcggtatagacgggactaccgagatcaccgccaccatcaccgctcgtac
agggatcgtttgcctcctcacgatcgatactacagggactgggactctgagcgtcgctac
gagcggacggtccaccacccgagggagcgtgatcgcgacaggtgctctcaccactaccac
cactaccatcaccaccgatccagagaggactgggacggtgagcggaggggacacggccat
tcctatcgcgaggactctcacagtcgctggaggtggcagcaggagagtcgagaatcccgg
ggggcgaaggacaagagcaacggcagagagaggaactatcattcttcaaaagaggagagt
tcctcacctgccagaatgccagaaacatcctctaagtccaagggcacaccccctcaggtc
tccctctccttatctggatcagctcctgacagggaggatcacaaaaggactgccgataat
ctgagcaaggacaaagatgaaagcccagaggcacgtcactctaaaaaacacaaaaagagc
aagaaaaagaagaaatcaaaggataaagacagacaccgtgagagcagaagttctgacggg
gattcagacagagccgcagagataaaaaagaaaaagaagaaaaagaggaggcagcgggac
agcgaggctgagcagcacagcccaggagccgctcacgaccacaagaacagaagcagcgag
gagagagaaagccgcaagcgacgtcaccacgacaccaaggacgctaaacatgacaatggt
ctttcgccagaaaagcgacgccgcgtggatgacgctgacggcagcagcaaccatctaccc
ccatcccatcacacctcacccaccaacggttcaactcaccgccatctcaacggatacaca
ggaaacggttacagccgaacaaacggtgactcccacggattctccagcggcctgaaacac
tga
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