Lates calcarifer (barramundi perch): 108880765
Help
Entry
108880765 CDS
T04895
Name
(RefSeq) mismatch repair endonuclease PMS2 isoform X1
KO
K10858
DNA mismatch repair protein PMS2
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03430
Mismatch repair
lcf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
108880765
03460 Fanconi anemia pathway
108880765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcf03400
]
108880765
DNA repair and recombination proteins [BR:
lcf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
108880765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
108880765
NCBI-ProteinID:
XP_018527981
UniProt:
A0AAJ7LNA5
LinkDB
All DBs
Position
LG23:complement(4643078..4650072)
Genome browser
AA seq
880 aa
AA seq
DB search
MSLETWKHICQLQAFRALKMSDACSSEPAGAIKAIDKHSVHQICSGQVVLTLATAVKELV
ENSIDAGATNVDVRLKECGAELVEVSDNGKGVEEANFEGLTLKHHTSKLRDFSDLIHVET
FGFRGEALSSLCALSDLNVVTCHESSQVGTKLVFDQKGHLVQQSPHPRQQGTTVSLQQLF
YTLPVRHKEFQRNIKKEYNKMIHVLQSYCIISTGVRITCSNQNGQGKRSTVLSTSGSQSM
RDNIGAVFGPKQLQSLLPFKQVSPTENIIEEYGLKDADLPKQLFTITGFVSQGDHGVGRS
ATDRQFFFINNRPCDPLKVTKLVNEVYHMYNRHQYPFVALNIAVASECVDVNVTPDKRQI
FLQEEKLLLAILKTSLINMYEAGVNKISLNYTPIPSTNATPASDLCQVVSSNKSMPEPGE
AMEPIIQSSKSSLNLASLKAAFSSHHSSNSGSKSNSGPTQKTLQSFFKGSVKTPTSNPSV
KSPLKPVKDLAKCSPVGKSVLDGFRYGRTSCGDTDLEKDRAVSSFVSTTEAPDRQCSVPE
LSSPEPAIVRPSVKDETFEEASDNSETVPGDPELQTEPCTSKEDGSESPDAKRARKENPH
FPTEHKSKAFLNCSEGSSSSIVDAPVCLQRRTMPLQFSLQELEGRIRRIQDQQKQKASEE
LCYRRFRAKINPGENQSAEEELKKEISKDMFKEMEIIGQFNLGFIITKLNSDIFMIDQHA
TDEKYNFEMLQQHTVLQGQKLIVPQKLHLTAVSENVLLENIEIFRKNGFEFLVDEEAQVM
ERVKLVSLPTSKNWTFGPADIEELIFMLSDSPGVMCRPSRVRQMFASRACRKSVMIGTAL
SVSEMKKLVVHMGEIEHPWNCPHGRPTMRHLANLDIISQD
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atgtcactagaaacatggaaacacatttgtcaactgcaggcttttcgggctttgaagatg
tctgatgcttgtagctctgaacctgcaggagccatcaaggccatagacaagcactcagtg
catcagatctgctcaggacaggtggtgctgactttggccactgctgtcaaagagctggtg
gaaaacagtattgatgcaggagccactaacgttgatgtgaggctgaaggagtgtggagct
gaactagtggaggtgtcagacaatggcaaaggtgttgaggaggccaactttgaagggctg
acactgaagcatcacacgtcaaagttaagggatttttctgatctcatccacgtggaaaca
tttggcttcagaggtgaagccctcagttctttatgtgctctcagtgacctgaatgtggtg
acgtgccatgagtccagccaggtggggaccaagctggtgtttgaccagaaaggccacttg
gtgcagcagtcaccccatccccgtcagcaaggcaccacagtcagcctgcagcagctcttc
tacaccctgcctgtacgacacaaggagttccaacgcaatataaagaaggagtataacaaa
atgatacatgtcctgcagtcgtactgtatcatctctacaggagtgcgtattacctgctcc
aaccaaaatgggcagggaaagcgtagcacagtgctcagcaccagtggtagccagagtatg
agagacaatataggagccgtatttggaccaaaacagctacagagtctcctgccttttaaa
caagtgtccccaacagaaaatattattgaagaatatggactcaaggatgcagatcttccc
aaacagcttttcaccatcacagggtttgtgtcacaaggagaccacggtgttgggagaagc
gccacagacagacagttctttttcatcaacaaccggccatgtgatccccttaaggtgacc
aagcttgtaaatgaagtctatcatatgtataacagacatcagtatccatttgttgccttg
aacatagctgtcgcctcagagtgtgtggatgtgaatgtaacaccagacaagcggcagatt
tttcttcaggaggagaaactcttgctggctattctaaagacctccctcatcaacatgtat
gaggccggagtcaataagatcagcctgaactatacacccattcccagcaccaatgcaaca
cctgcatccgacctgtgccaggttgtctcatctaacaagagcatgccagaacctggggag
gccatggaaccaataatacagagctcaaagtcatctttgaacctggccagcctaaaagct
gctttttcaagtcatcacagctccaattctgggagcaaatcaaacagtggcccaacgcag
aaaacactgcagtctttttttaagggttctgtaaaaactcctacctccaacccaagtgtt
aaatctcctttgaaacctgtaaaagatctagctaaatgctctccagtgggaaagtcagtg
ctagatggattcagatacggaaggacgtcatgtggtgatacagaccttgaaaaagacagg
gccgtgtccagttttgtttccactacagaagctccagatagacagtgttctgtcccagag
ctcagttctcctgaaccagcgattgtcagacccagtgtaaaagatgaaacattcgaagag
gcatcagacaatagtgagaccgttcctggagatccagagttacagactgagccatgtacc
tcaaaggaggatggcagtgagagccctgatgccaagagggccaggaaagagaatccacat
tttcctacagaacacaaatccaaggctttcttaaactgttctgaaggatcctcttcctct
atagtggatgctccagtctgcttacagaggaggacaatgcctctccagttctccctacaa
gagcttgaagggaggataaggaggatacaggaccagcagaaacaaaaggccagtgaggag
ctttgctaccggcgcttcagggccaagatcaaccctggagaaaaccaaagtgcagaggaa
gagctgaagaaggagatcagcaaagacatgttcaaagagatggagatcatcggtcagttc
aacctgggcttcatcatcaccaaactcaactcagacatcttcatgattgaccaacacgcc
acagatgagaagtacaactttgagatgctgcagcagcacactgtgctccaaggacagaaa
ctcatagtccctcagaaacttcacctcacagcggtcagtgagaacgtactcttagagaac
attgagattttcaggaagaatggctttgaatttctggttgatgaggaagcccaggtgatg
gagagggttaagctggtgtcactgcccaccagtaagaactggacattcggtccggccgat
atcgaggagctgatcttcatgttgagtgacagcccaggggtcatgtgccgaccgtccaga
gtcagacagatgtttgcatccagagcttgtcgcaaatctgtgatgattggcactgccctg
agtgtcagcgagatgaagaagttggtggttcacatgggggaaattgagcatccatggaac
tgtcctcacggcaggcccaccatgagacacctcgccaacctggacattatctcacaagac
tga
DBGET
integrated database retrieval system