KEGG   Lates calcarifer (barramundi perch): 108880765
Entry
108880765         CDS       T04895                                 
Name
(RefSeq) mismatch repair endonuclease PMS2 isoform X1
  KO
K10858  DNA mismatch repair protein PMS2
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf03430  Mismatch repair
lcf03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    108880765
   03460 Fanconi anemia pathway
    108880765
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lcf03400]
    108880765
DNA repair and recombination proteins [BR:lcf03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    MutL homologs
     108880765
SSDB
Motif
Pfam: MutL_C DNA_mis_repair HATPase_c_3 HATPase_c
Other DBs
NCBI-GeneID: 108880765
NCBI-ProteinID: XP_018527981
UniProt: A0AAJ7LNA5
LinkDB
Position
LG23:complement(4643078..4650072)
AA seq 880 aa
MSLETWKHICQLQAFRALKMSDACSSEPAGAIKAIDKHSVHQICSGQVVLTLATAVKELV
ENSIDAGATNVDVRLKECGAELVEVSDNGKGVEEANFEGLTLKHHTSKLRDFSDLIHVET
FGFRGEALSSLCALSDLNVVTCHESSQVGTKLVFDQKGHLVQQSPHPRQQGTTVSLQQLF
YTLPVRHKEFQRNIKKEYNKMIHVLQSYCIISTGVRITCSNQNGQGKRSTVLSTSGSQSM
RDNIGAVFGPKQLQSLLPFKQVSPTENIIEEYGLKDADLPKQLFTITGFVSQGDHGVGRS
ATDRQFFFINNRPCDPLKVTKLVNEVYHMYNRHQYPFVALNIAVASECVDVNVTPDKRQI
FLQEEKLLLAILKTSLINMYEAGVNKISLNYTPIPSTNATPASDLCQVVSSNKSMPEPGE
AMEPIIQSSKSSLNLASLKAAFSSHHSSNSGSKSNSGPTQKTLQSFFKGSVKTPTSNPSV
KSPLKPVKDLAKCSPVGKSVLDGFRYGRTSCGDTDLEKDRAVSSFVSTTEAPDRQCSVPE
LSSPEPAIVRPSVKDETFEEASDNSETVPGDPELQTEPCTSKEDGSESPDAKRARKENPH
FPTEHKSKAFLNCSEGSSSSIVDAPVCLQRRTMPLQFSLQELEGRIRRIQDQQKQKASEE
LCYRRFRAKINPGENQSAEEELKKEISKDMFKEMEIIGQFNLGFIITKLNSDIFMIDQHA
TDEKYNFEMLQQHTVLQGQKLIVPQKLHLTAVSENVLLENIEIFRKNGFEFLVDEEAQVM
ERVKLVSLPTSKNWTFGPADIEELIFMLSDSPGVMCRPSRVRQMFASRACRKSVMIGTAL
SVSEMKKLVVHMGEIEHPWNCPHGRPTMRHLANLDIISQD
NT seq 2643 nt   +upstreamnt  +downstreamnt
atgtcactagaaacatggaaacacatttgtcaactgcaggcttttcgggctttgaagatg
tctgatgcttgtagctctgaacctgcaggagccatcaaggccatagacaagcactcagtg
catcagatctgctcaggacaggtggtgctgactttggccactgctgtcaaagagctggtg
gaaaacagtattgatgcaggagccactaacgttgatgtgaggctgaaggagtgtggagct
gaactagtggaggtgtcagacaatggcaaaggtgttgaggaggccaactttgaagggctg
acactgaagcatcacacgtcaaagttaagggatttttctgatctcatccacgtggaaaca
tttggcttcagaggtgaagccctcagttctttatgtgctctcagtgacctgaatgtggtg
acgtgccatgagtccagccaggtggggaccaagctggtgtttgaccagaaaggccacttg
gtgcagcagtcaccccatccccgtcagcaaggcaccacagtcagcctgcagcagctcttc
tacaccctgcctgtacgacacaaggagttccaacgcaatataaagaaggagtataacaaa
atgatacatgtcctgcagtcgtactgtatcatctctacaggagtgcgtattacctgctcc
aaccaaaatgggcagggaaagcgtagcacagtgctcagcaccagtggtagccagagtatg
agagacaatataggagccgtatttggaccaaaacagctacagagtctcctgccttttaaa
caagtgtccccaacagaaaatattattgaagaatatggactcaaggatgcagatcttccc
aaacagcttttcaccatcacagggtttgtgtcacaaggagaccacggtgttgggagaagc
gccacagacagacagttctttttcatcaacaaccggccatgtgatccccttaaggtgacc
aagcttgtaaatgaagtctatcatatgtataacagacatcagtatccatttgttgccttg
aacatagctgtcgcctcagagtgtgtggatgtgaatgtaacaccagacaagcggcagatt
tttcttcaggaggagaaactcttgctggctattctaaagacctccctcatcaacatgtat
gaggccggagtcaataagatcagcctgaactatacacccattcccagcaccaatgcaaca
cctgcatccgacctgtgccaggttgtctcatctaacaagagcatgccagaacctggggag
gccatggaaccaataatacagagctcaaagtcatctttgaacctggccagcctaaaagct
gctttttcaagtcatcacagctccaattctgggagcaaatcaaacagtggcccaacgcag
aaaacactgcagtctttttttaagggttctgtaaaaactcctacctccaacccaagtgtt
aaatctcctttgaaacctgtaaaagatctagctaaatgctctccagtgggaaagtcagtg
ctagatggattcagatacggaaggacgtcatgtggtgatacagaccttgaaaaagacagg
gccgtgtccagttttgtttccactacagaagctccagatagacagtgttctgtcccagag
ctcagttctcctgaaccagcgattgtcagacccagtgtaaaagatgaaacattcgaagag
gcatcagacaatagtgagaccgttcctggagatccagagttacagactgagccatgtacc
tcaaaggaggatggcagtgagagccctgatgccaagagggccaggaaagagaatccacat
tttcctacagaacacaaatccaaggctttcttaaactgttctgaaggatcctcttcctct
atagtggatgctccagtctgcttacagaggaggacaatgcctctccagttctccctacaa
gagcttgaagggaggataaggaggatacaggaccagcagaaacaaaaggccagtgaggag
ctttgctaccggcgcttcagggccaagatcaaccctggagaaaaccaaagtgcagaggaa
gagctgaagaaggagatcagcaaagacatgttcaaagagatggagatcatcggtcagttc
aacctgggcttcatcatcaccaaactcaactcagacatcttcatgattgaccaacacgcc
acagatgagaagtacaactttgagatgctgcagcagcacactgtgctccaaggacagaaa
ctcatagtccctcagaaacttcacctcacagcggtcagtgagaacgtactcttagagaac
attgagattttcaggaagaatggctttgaatttctggttgatgaggaagcccaggtgatg
gagagggttaagctggtgtcactgcccaccagtaagaactggacattcggtccggccgat
atcgaggagctgatcttcatgttgagtgacagcccaggggtcatgtgccgaccgtccaga
gtcagacagatgtttgcatccagagcttgtcgcaaatctgtgatgattggcactgccctg
agtgtcagcgagatgaagaagttggtggttcacatgggggaaattgagcatccatggaac
tgtcctcacggcaggcccaccatgagacacctcgccaacctggacattatctcacaagac
tga

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