Lates calcarifer (barramundi perch): 108880825
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Entry
108880825 CDS
T04895
Name
(RefSeq) B-cell receptor CD22 isoform X1
KO
K06467
CD22 antigen
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
108880825
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lcf04515
]
108880825
04090 CD molecules [BR:
lcf04090
]
108880825
04091 Lectins [BR:
lcf04091
]
108880825
Cell adhesion molecules [BR:
lcf04515
]
Immunoglobulin superfamily
SIGLEC family
108880825
CD molecules [BR:
lcf04090
]
Proteins
108880825
Lectins [BR:
lcf04091
]
I-type lectins (Siglecs)
108880825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
Ig_2
ig
I-set
V-set
Ig_5
C2-set_2
Ig_4
Ig_CD22
Ig_6
PKD
V-set_CD47
Motif
Other DBs
NCBI-GeneID:
108880825
NCBI-ProteinID:
XP_018528061
UniProt:
A0AAJ7PJF9
LinkDB
All DBs
Position
LG5:complement(2361094..2368667)
Genome browser
AA seq
562 aa
AA seq
DB search
MRGAAMSLTAASGGFVVLLLTVSVVQGQDGWGVTYTSTKICAFKGSTVDIHCTYTYPPRI
KGHNTTVERTFWFTKVQNKEPVDLRTDSDYTGRVQYHCAENSCTLIITDLRESDSAVYKF
RFITNQDGGCFIGSPGVTVSVSDLQVQVRRSSEQVELRCHSSCNVADHPSYVWYLNGQKM
EEERFSLRVSVNDHNRYSCAVKGHEDHCSPPVYPPVLPSVSVSPSGQIVEGSSVTLTCSS
DANPAAKYTWYKENGHQQSQLFIRKSQLVFRSIQPSDSGEYFCVVENNLGMRTSRYIFID
VTYPPKLPSVSVSPSGQIVEGSSVTLTCSTDANPAAKYTWYKENDHKYHSQGPQLVFSSI
QSSDSGQYYCAAENNLGMRTSQYIFIGVKYAPVLPSVSVSPSGQIVEGSSVNLTCSSDAN
PAAKYTWYKENEDSPKASGQIFTITDFRAEHSGNYYCEAQNERGRQNSTLHLTVGTSSPL
LGNSAGMMNIIRLTLVVLMLIPLLLLILWTRRKKTPLSSTTEPNDYEETVEMDSPPVYED
VSDLKAVTAAETEDTEEQEDVV
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgagaggagcagctatgagtttaacagcagcatcaggtggatttgtcgtcctcctcctc
actgtgtcagtggtacagggtcaggatggctggggagtgacttacacttctactaagatc
tgtgcctttaaaggatcaacagtggacatacactgcacctacacatacccacccaggata
aaaggccataatactacagttgagagaacattctggttcactaaagtgcagaataaagaa
cctgtggatctgagaacagactcagactacacaggtcgtgtgcagtatcactgtgctgag
aacagctgcactctgataatcacagacctgagagagagcgactcagctgtgtacaagttc
aggttcataacaaaccaagatggtggatgttttattggttcacctggagtcactgtgtct
gtctcagacctccaggtgcaggtgagaagatcatcagagcaggtggagctgaggtgtcac
agcagctgtaatgtagctgatcatccttcatatgtctggtacctgaatggacagaaaatg
gaggaagaaagattttctctcagagtctctgttaatgatcacaacagatattcctgtgct
gttaaaggacatgaggatcactgctcccctccagtgtatcctccagttcttccctcagtg
tcagtgagtccctctggtcagatagtggagggcagctcagtgactctgacctgtagcagt
gatgctaacccagcagctaaatacacctggtacaaggagaatggccatcaacaatctcaa
cttttcattagaaagtcacagcttgtcttcagatccatccagccctctgattctggagag
tatttctgtgtggtagagaacaacctgggaatgaggacatctcgatacatctttattgat
gtgacatatcctccaaagcttccctcagtgtcagtgagtccctctggtcagatagtggag
ggcagctcagtgactctgacctgtagcactgatgctaacccagcagctaaatacacctgg
tacaaggagaatgaccataaatatcacagccaaggaccacagcttgtcttcagctccatc
cagtcctctgattctggacagtattactgtgcagctgagaacaacctggggatgaggaca
tctcaatacatctttattggtgtgaaatatgctccagttcttccctcagtgtcagtgagt
ccctctggtcagatagtggagggcagctcagtgaatctgacctgtagcagtgatgctaac
ccagcagctaaatacacctggtacaaggagaatgaagactcaccaaaagcttcaggacag
atcttcaccatcactgacttcagagctgaacacagtgggaattattactgtgaagcccag
aatgaaagaggacgtcagaactccaccttacatctgactgttgggacgtcgtctccatta
ctggggaactcagcagggatgatgaatatcatcaggttgactctggtggtcctgatgctg
attcctctgcttctgttgattctgtggaccaggaggaagaaaactccactgagctccacc
actgaaccaaatgactatgaagagactgtagagatggactctcctcctgtgtacgaggac
gtctcagacttgaaggccgtcactgcagcagagacagaagacacagaggagcaggaagat
gtggtgtga
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