Lates calcarifer (barramundi perch): 108880872
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Entry
108880872 CDS
T04895
Symbol
smc1b
Name
(RefSeq) structural maintenance of chromosomes protein 1B
KO
K06636
structural maintenance of chromosome 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04110
Cell cycle
lcf04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
108880872 (smc1b)
04114 Oocyte meiosis
108880872 (smc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lcf03036
]
108880872 (smc1b)
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
108880872 (smc1b)
Meiosis-specific proteins
Cohesin complex and associated proteins
108880872 (smc1b)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_21
AAA_23
AAA_15
AAA_29
Motif
Other DBs
NCBI-GeneID:
108880872
NCBI-ProteinID:
XP_018528106
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Position
LG10:4036956..4049371
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AA seq
1254 aa
AA seq
DB search
MGYLKQIDVENFKSWRGKQVIGPFMRFNCIIGTNGSGKSNVMDALSFVMGERVASLRVKH
LRDLVHGAHIGRPVSDTARVAMRYCDNKDLETVFCRSIIGDSSEYCINGVRVTLAKYLEE
FGKIGIVTKAQNCLVFQGAVESIALKDPKERTKMFELISQSREYAAEYNKKKEALLKAKE
DTQFHFNKKKSAAVERKHVSQEKLEAQKYQALVDDLHQNRLQLSLAELYHNEKGINALSD
DLRKVQQAAAVKKNELAAWEETVKTHKKEHGRLAREQQHIEKAIRAQEHILSQSQSKYIK
SKVNTSHHKKKAEEVRNALKKDQRLLAVKKQELAEGRQEIAELERTWSIYERRVQEQGAS
RGRDIELEEDQLERYKELKELARKQGAVLSQQAEKLHWEVRADYEKLAFDQRRKKEVEVD
IRNNQAQLEDLTSRAEKLEEYTKTCKSSIEEYRQQEESLSAELEQGRQRSEEVNRELGQV
LEELGNARLDSQENRRQLRRKELLERLRRLYPESVYGRLSDLCSPIHKKYQLAVIKVFGR
YMNAIVVASEKVARDCISFMKEERAEPETFLPIDYLDVSPLHERLREVPGAKMVVDVVKV
NVATGAAQLRKVVQFVCGNALVCETIKEARIVAFDRQERLKTVSLDGTLFAKSGVISGGS
SDLRSKARCWDEKDMTRLKERKDQLTAEIRDLMKLKRKEPDLKQIIAQAQGAQIRLKYSK
TELDILRKKSILRCQAEISRMESELANLDSQIQMQQESVEAKDEEMRKIRDQINQMEDLV
FSDFCAEIGVDSIREYEQEYLKQQTELDKKRLEFERQFARLNTQLEYEQDQVEQLKKKLH
KMEEIINKEERTMAEQRKDEEKLLVAVEEVENKLLELKNQLLSKKSQVAAAKAELDQKTQ
SLHESNKELVKLQREVMCAETALEHKRLARHNLLLACKIQSLPITLLSGSLNEISEVQLD
TESESTSATMDIYEREAQLVIDYSELQAELRGLQTEEEVAAYLERLRESVSSIEEVLHRT
PAPNLKALEKMREVKDKLQGVTEAFDASTKIGRKCSQEFEQVKAQRFHLFSQCFEHVSIV
IDQIYKRICRNSSAQATLSADNPDEPYLGGINYNCVAPGKRFMSMDNLSGGEKAIAALAL
LFAIHSFRPAPFFVLDEVDAALDNSNIGKVTSFIREESRENMQIIVISLKEEFFSKADAL
LGVYSDFDEFMFSRILTLDLQPYPLVEEDNGKQTDKEVHRVDRRQDSYSLGSTV
NT seq
3765 nt
NT seq
+upstream
nt +downstream
nt
atgggttatctgaaacaaatagatgtggaaaacttcaagtcgtggcgtgggaagcaagtt
atcggtcccttcatgcgatttaattgtataattggcacaaacggctccggcaagtccaat
gtcatggacgctctgagctttgtcatgggcgagcgggttgcctccctgcgagtgaagcac
ctcagagacctggttcacggagcccacatcgggcggcccgtgtctgacaccgcccgcgtc
gccatgcggtactgtgacaacaaagacctggagaccgtcttctgtcggagtatcatcggg
gactcctctgagtattgcatcaatggtgtacgtgttactcttgccaaatacttggaggag
tttgggaagattggcattgtgaccaaagctcaaaactgtctggtgttccagggggcagtg
gagtccatagctttgaaagacccaaaggagaggaccaagatgttcgagctcatcagtcag
tcgagggagtacgctgcagagtacaataagaagaaagaggccctgctgaaggccaaagag
gacacacagtttcacttcaacaagaagaaatctgccgctgttgagaggaagcacgtgtcc
caggaaaaattagaggcccagaagtaccaggcactggtggacgaccttcaccaaaaccga
ctgcagctgagcctggctgaactctaccacaatgagaagggcatcaacgctctcagcgac
gacctgagaaaggtgcagcaggctgcggctgtaaagaaaaatgaattggccgcctgggag
gagacggtcaaaacccacaagaaggagcacggacgtctcgctagagagcagcagcacatc
gaaaaggcgatccgcgcccaggagcatatcctgtcccagtctcagtccaagtacatcaaa
tccaaggtaaacacctcccatcacaagaagaaagctgaggaggtccgtaatgccctgaag
aaggatcagaggctgctggccgttaagaagcaggagctggctgagggtcggcaggagatt
gctgaactggagaggacctggagcatctacgagaggcgtgtccaggagcagggagcctcc
cgtgggagggacatcgagctggaggaagatcagttagagcgctacaaggagctgaaggag
ctggcccgaaagcagggggctgtcctcagccagcaggcagagaagctgcactgggaggtg
agagccgactatgaaaagttggctttcgaccagcgcaggaagaaggaagtggaggttgac
atcaggaacaaccaggctcagctggaagatttgacaagtagagcagagaagctggaggag
tacaccaagacctgcaagtcgtccattgaggaataccgccagcaggaggagagcctgagc
gcagagctggagcagggccgccagcgcagcgaggaggtgaaccgggagctgggtcaggtg
ctggaggagcttggaaacgctcgtctggacagccaggagaacagacgccagctgcggcgc
aaagaactgctcgagaggctccgcagactctaccctgaaagtgtgtatggtcgcctctct
gacttgtgcagtcccatccacaagaagtaccagctggctgtcatcaaggtgtttggccgc
tacatgaatgctattgtggtggcctcggagaaagtggcccgcgactgtatctcgttcatg
aaggaggagcgagctgaacctgaaaccttcctgcccatcgactacttggatgtgagtcct
ctgcatgagcgactgagggaggtgcccggtgccaagatggtggtggatgttgtcaaggtt
aacgtcgccacaggtgccgctcagctgagaaaagtggtgcagtttgtctgtggcaacgca
ttggtgtgtgagacgattaaagaggctcggattgtggcctttgacaggcaggagcgcctt
aagacagtatctctggacgggacgctgtttgcaaagtctggtgtgatctctggaggctcc
agtgatctgcggagcaaagctcgctgctgggacgagaaggacatgacacggctgaaggaa
cgcaaggatcagctgacagctgagattcgcgatctgatgaagctgaagcggaaggagcca
gacctgaaacagatcatcgctcaggctcagggtgctcagatccgcctcaaatactccaaa
actgagcttgacatcctgcggaaaaaaagcatcctcagatgccaagcggagatttcccgt
atggagagcgaattagcaaacctggactctcagatccagatgcaacaggaaagtgtggag
gcaaaggatgaagagatgaggaagatcagagaccagatcaaccagatggaggacttagtg
ttttctgacttctgtgctgagatcggtgtggacagcatccgggagtacgagcaggagtat
ctgaaacagcagacggagctcgacaagaaacggctggagtttgagagacagtttgctcgc
ctgaacacacagctggaatatgaacaagaccaagtggagcagctgaagaagaaactccac
aaaatggaggagatcatcaacaaggaggagagaaccatggcagagcagaggaaggatgag
gagaagctgctggtggcagtggaggaagttgagaacaaactgctggagctgaagaaccag
ctgctgtctaaaaagagccaagtggctgctgccaaagctgagctggaccagaaaacccag
agccttcacgagagcaacaaagagttggtgaagcttcagcgggaggtgatgtgtgcagag
acggctttggagcacaaacgcctggccagacacaacttactgctggcctgcaagatccag
agtctgcccatcactctgctgtcagggagtctgaatgaaatcagcgaggtgcagctggac
acagaatcggaaagcacgtcagccaccatggacatctacgagagagaggcacagctggtc
attgattactctgagctgcaagcagagctcaggggtttgcagacggaggaggaggtggcg
gcttacctagagaggctgagggagtcagtgtcctccatagaggaagtgctgcatcgcacc
cctgcccccaatctgaaagccctggagaagatgagggaggtgaaggacaagttacaggga
gtgactgaagcatttgatgccagcaccaaaataggcaggaagtgcagtcaggagtttgag
caggtcaaagcccagcgcttccacctcttcagccagtgcttcgagcatgtgtccatcgta
atcgatcagatctataagagaatttgcaggaacagcagcgctcaggccactctgagtgca
gacaatccagatgagccgtacctcggaggcatcaactacaactgcgtggcgccagggaaa
cgcttcatgtccatggacaatctgtctggaggagagaaggccatcgctgctctggccctg
ctgttcgccatccacagcttccgccccgctcccttcttcgtcttggatgaagtggatgca
gccttggacaacagtaacatcggcaaggtgaccagtttcatcagggaggagtccagagag
aacatgcagatcatcgtcatctccctgaaggaggagtttttctccaaggcagacgctttg
ctgggagtctactcggattttgatgaattcatgttcagccgcattctgaccctggacctg
cagccctaccctctggttgaggaggacaatgggaaacagacagacaaggaggtgcacaga
gtggacagaaggcaggattcgtatagcctggggtcaaccgtatga
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