Lates calcarifer (barramundi perch): 108880883
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Entry
108880883 CDS
T04895
Symbol
esr1
Name
(RefSeq) estrogen receptor
KO
K08550
estrogen receptor alpha
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04081
Hormone signaling
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04081 Hormone signaling
108880883 (esr1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108880883 (esr1)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
lcf03310
]
108880883 (esr1)
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Zinc finger
Cys4 estrogen receptor-like
108880883 (esr1)
Nuclear receptors [BR:
lcf03310
]
3. Estrogen like
3A. Estrogen receptor
108880883 (esr1)
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Paralog
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Motif
Pfam:
Oest_recep
zf-C4
Hormone_recep
zf-C17orf113
Motif
Other DBs
NCBI-GeneID:
108880883
NCBI-ProteinID:
XP_018528119
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Position
LG7_1:complement(9935239..9946969)
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AA seq
620 aa
AA seq
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MCKRQSPAQNRQPCGPALRSRISPAFSELETLSPPRLSPPPRAPLGDMYPEESRGSGGVA
TVDFLEGTYDYAAPTPAPTPLYSHSTTGYYAPLDAHGPPSDGSLQSLGSGPTSPLVFVPS
SPRLSPFMHPPSHHYLESTSTPIYRSSQQPVSREDHCGTSDESYSVGESGAGARAGGFEM
VKETRFCAVCSDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDRNRRKSCQ
ACRLRKCYEVGMMKGGVRKDRGRVLRRDRRRTGTNDKDKASKDLEHRAAPLHDGRKHGSS
SSTGGGGGKSSVAGMSPDQVLLLLQGAEPPMLCSRQKLSRPYTEVTMMSLLTNMADKELV
HMIAWAKKLPGFLQLSLHDQVQLLESSWLEVLMIGLIWRSIHCPGKLIFAQDLILDRNEG
DCVEGMAEIFDMLLATTSRFRMLRLKPEEFVCLKAIILLNSGAFSFCTSTMEPLHDGVAV
QDMLDTITDALIHHISQSGCSVQQQSRRQAQLLLLLSHIRHMSNKGMEHLYSMKCKNKVP
LYDLLLEMLDAHRLHRPVNPAQSRFQADREPSTTTITSSRGSSSAGSSSGVPGSHESLSR
APTGPDVLQYGAPRADCTHI
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgtgtaagaggcagagcccagcacagaacaggcagccttgtggaccagcactcagatcc
aggatcagcccggccttctcagagctggagaccctctccccgccacgtctctcgcctcca
ccgcgtgcccccctcggtgacatgtaccccgaagagagccggggttctggaggggtagcc
actgtggacttcctggaagggacgtacgactatgccgcacccacccctgccccgactcct
ctctacagccactccaccactggctactatgctcctctggatgcccacggaccaccctct
gatggcagtcttcagtccctaggcagcgggcctaccagtcctctagtgtttgtgccctcc
agcccccgactcagcccctttatgcacccgcccagccaccactatctggaaagcacttca
acacccatctacaggtctagtcagcaaccagtatccagagaggaccactgtggcaccagt
gacgagtcgtacagtgtgggggagtcaggtgctggagccagggccggggggtttgagatg
gttaaagagacacgtttctgtgccgtgtgcagtgactatgcctctgggtaccactacggg
gtgtggtcctgtgagggctgtaaggccttcttcaagaggagcatccagggtcacaatgac
tatatgtgcccagcaaccaatcagtgtactattgacaggaatcggaggaagagctgccag
gcttgccgtcttaggaagtgttatgaagtgggcatgatgaaaggaggtgtgcgtaaggac
cgtggccgtgttttgcggcgtgacaggcgacggactggtactaatgacaaggataaggcc
tctaaggacctggagcacagagcagcacccctccatgatgggaggaaacatggcagcagc
agcagtactggaggaggaggaggaaaatcatcggtcgctggcatgtcacctgatcaggtg
ctcctcctgctccagggtgctgagcccccaatgctttgctcccgtcagaagctgagccga
ccctacactgaggtcaccatgatgtccctgctcaccaacatggctgacaaggagctggtc
cacatgatcgcctgggccaagaagcttccaggtttccttcagctgtccctccatgaccag
gtgcagctgctggagagctcgtggttggaggtgctgatgattgggctcatctggaggtcc
atccactgccctggcaaactcatcttcgcacaggacctcatactggacaggaatgaaggc
gactgcgtcgagggcatggctgagatcttcgacatgctactggctactacttcccgcttc
cgcatgctcagactcaaacctgaggagtttgtctgtcttaaagccatcatcttgctcaac
tctggtgctttctctttctgcaccagcacaatggagccactacatgatggcgtggctgta
caggacatgctggacaccatcacggacgctctcatacatcacatcagccaatcaggatgc
tcagttcagcagcagtcgagacggcaggcccagctgctcctcctgctctcccacatcagg
cacatgagcaacaaaggcatggagcacctctacagcatgaagtgcaagaacaaagtgcct
ctgtacgacctgctcctggagatgctggatgctcaccgcctccaccgccctgtgaatcca
gctcagtcccggttccaggctgacagagagccctccaccaccaccatcaccagcagcaga
ggctcctcttcagccggctctagttctggagtcccaggcagccacgagagcctgagcaga
gccccgacaggaccagatgtcctgcagtatggagcgccccgtgccgactgcacccacatc
taa
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