Lates calcarifer (barramundi perch): 108880913
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Entry
108880913 CDS
T04895
Symbol
stxbp5a
Name
(RefSeq) syntaxin-binding protein 5a isoform X1
KO
K08518
syntaxin-binding protein 5
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108880913 (stxbp5a)
Membrane trafficking [BR:
lcf04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
108880913 (stxbp5a)
SNARE
VAMP, Ykt6, Sec22 (R)
Tomosyn
108880913 (stxbp5a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LLGL
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
ANAPC4_WD40
WD40_Prp19
WD40
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
EIF3I
Lgl_C
Beta-prop_NUP159_NUP214
Beta-prop_Vps41
Synaptobrevin
Beta-prop_VPS8
VPS8_N
WD40_like
CFAP43_N
Motif
Other DBs
NCBI-GeneID:
108880913
NCBI-ProteinID:
XP_050927820
UniProt:
A0AAJ8DQK4
LinkDB
All DBs
Position
LG7_1:10398425..10493215
Genome browser
AA seq
1094 aa
AA seq
DB search
MKKFNIRKVLDGLKEVSSSTPSVQVGPQENHLIQETLQSEHFQLCKTVRHGFPYQPSSMA
FDPVQKILAIGTQSGALRLFGRPGVECYCQHESGAAVIQLQFLINEGALVSALADDSVHL
WNLRQKRPAILHSLKFNRERITFCHLPFQSKWLYIGTERGNIHIVNVESFMLSGYVIMWN
KAIELSSKAHPGPVVHISDNPMDEGKLIIGFESGIVVLWDLKSKKADYRYTYDEAIHSVA
WHHEGKQFICSHSDGTLTIWNVRGQGKPIQTITPHGKQPKDGKKPEPCKPILKVEYKTTR
NGDPFIILSGGLSYDTVGRRPCLTVMHGKSTAVLEMDYPIVDFLTLCETPYPNDFQEPYA
VVVLLEKDLVVIDLAQNGYPIFENPYPLTIHESPVTCCEYFADCPVDLIPALYSVGSRQK
RQGYSKKEWPISGGNWGQGTQSYPEIIITGHADGTVKFWDASAIMLQVLYKLKTAKVFDR
NRSKEDKGSTETSDEDPFAIQIMSWCPESRMLCVAGVSANVIIYRFSKLEVTTEVVQLLE
VRMQYELNDIESPDGGGGGGEQTSAHPTPGASPQTSGPPSHPSTSSNNSDGGNIPCLKVR
STPLKQSPGYQVDLVVQLVWVSGEPPQQITSLALNSSYGLVVFGNSNGLAVVDYIQKTVV
LNLGTVELYGSNDPYQRQPRSPRKTRQPSGGLCDINEGSATSEDRCKSPTSDHRDNSFSR
SRSSSVTSIDKEAREAISSFHFCETFARKGDSTLTHCLYVGTSLGTVLALALTLPPAGEQ
RQLQPVIISPTGMLVRLKGSILRMAVLDSTGSQVPPAYEPWYEPNVTADGEEREKVRKRR
PVSVSPSTSQDLNESQYAVVCSEKQAKVISLPSQTCIYKHSITETSFILRADVVQMSQGV
CVACFCANGHIMTLSLPGLRPLMDVNYLPLTDMRIARTFCFTNLGQAMYLCSPTEVQRIT
YSQDTCENLQEMLGELFTPVETPEAPNRGFFKGLFGGGAQSLDREELFGELAAGKASRSL
AQHIPGPGGIEGMKGAASGVVGDLARARIALDERGQKLGELEERTAAMMASADSFSKHAH
EMMLKCKDKKWYQF
NT seq
3285 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagttcaacatcaggaaggtgctggacggcttgaaagaggtgtcctcctccacc
ccgtctgtccaagtggggccacaggagaaccatctgatccaggagaccctccagtccgag
catttccagctctgcaagactgtccgtcatggcttcccctatcagccgtcgtccatggct
ttcgatcctgtgcagaagatactggccattggcacccagagcggcgctctcagattgttt
ggtcgtccaggtgtggagtgttactgtcagcatgagagcggagctgccgtcatccaactg
cagtttctaatcaacgagggagcgttggtgagtgctctggcggatgacagtgtccacctg
tggaacctgaggcagaagagaccagccatccttcactccctcaagttcaacagagagaga
ataactttctgccacctgcccttccagagcaaatggttgtacatcggcacggaacggggg
aacatccacatcgtcaacgtggagtcctttatgctctcaggctatgtcatcatgtggaac
aaagccattgaactgtcctccaaggctcaccctggaccagttgtacatataagtgacaac
ccaatggacgagggaaagcttataattggatttgagtctgggatcgtggtcctgtgggat
ctgaaatcaaagaaggccgactatcgctacacttacgatgaggcgatccactcagttgcc
tggcatcacgagggcaagcagttcatttgcagtcactcagatggaactctgaccatatgg
aacgtcagaggccagggcaagcccatacagacaatcaccccacacggaaaacagcccaag
gacgggaagaagccagagccttgtaaacccattctcaaagtggagtacaaaaccactaga
aatggggatcccttcataatcctgtctggtggcctgtcctatgacactgtgggccggcgg
ccttgtctgacagtaatgcatgggaagagtacggctgtgctggagatggactatcccata
gtagattttctcacactctgtgagacaccataccctaatgattttcaggaaccttacgct
gtcgtggtccttctggaaaaggatttagtggtgatcgaccttgcacaaaatggttacccc
atattcgagaacccctatcctctgactatccacgagtctcctgtgacctgctgcgagtac
tttgccgactgccctgtggacctcatacctgcactttactctgttggctcgcggcagaaa
cgtcagggctacagcaaaaaggaatggcctattagtggtggaaactggggtcaaggcaca
cagagctacccagagatcatcatcactgggcatgctgatggaactgtgaagttctgggat
gcctctgcaataatgctccaggtgctttacaagctcaaaacagccaaggtgtttgacaga
aaccggtccaaggaagacaagggcagcacggagacatcagacgaagaccccttcgccatc
cagattatgtcctggtgccccgagagccggatgctgtgcgtagccggggtgtcagccaac
gtcatcatctaccgcttcagcaagctggaagtaactaccgaggtggtgcagctactagag
gtgcgaatgcagtacgagctgaacgacatagagtccccagatggtggaggtggagggggg
gaacagacatcggcacatccgacacccggcgcctcccctcagacaagtggcccaccttcg
cacccctccaccagcagcaacaactcagatggaggcaacattccctgcctcaaagtgcgc
agcactcctctgaaacagtctccaggttaccaggtagatttggtggtccagttagtgtgg
gtgagtggagagcctcctcagcagatcacgagtttggcgctcaattcctcctacggccta
gtggtgtttggcaacagtaacggtctggcagtggtggattacatccagaagacagtagtg
ctcaacttggggacggtcgagctttacggctccaatgacccctaccagagacagccccgg
tcgccaagaaagacacgacagccttctggaggtctgtgcgacatcaatgagggctcagcc
acgtcagaggaccgctgcaagtcccccacttcagaccaccgggacaactctttcagccgc
tctcgctcctccagcgtcaccagcatcgacaaggaagcccgagaggccatcagctccttc
cacttctgcgagaccttcgcccggaagggggacagcactttgacacactgcctgtatgtg
ggcacctccctgggaactgtgctggctttagccctcacattgccacctgctggggagcaa
cggcaactgcagccggttatcatttcacctacaggcatgttggtgcggctgaagggcagc
atcttgcggatggctgtcctagactccacagggtcccaggttccccctgcatacgagcct
tggtacgaacccaacgttacagcagacggtgaagaaagagagaaggtccgcaagcgccgg
cccgtgtccgtgtccccttccacttcccaggacctcaacgagagccagtacgccgtggtg
tgttcagagaaacaggccaaagtcatttccctcccctcccagacctgcatctataaacac
agcatcacagagacctccttcatcttacgggcagatgtggtgcagatgagccaaggcgtg
tgcgtggcttgtttctgtgccaatggccacatcatgaccctcagtttgccaggactgaga
ccactcatggatgtaaactacctgcctttgacagacatgcggatagccaggacattttgt
ttcaccaacctaggtcaggccatgtacctctgctctcccactgaggtccagaggatcact
tacagccaggacacctgtgaaaacctacaagagatgctgggtgaactttttacaccagtg
gagacaccagaggcacccaacagagggttcttcaaaggtctctttgggggaggagctcag
tcactggacagagaggagctatttggcgagttagcagctggaaaggcatctcgaagcctg
gcccagcacatcccaggcccgggtggcatcgagggcatgaagggggcagcctctggtgtg
gttggagatctggcacgtgcccgaatagcactggatgaaagaggccagaaactgggcgag
ctggaggagaggacagctgccatgatggccagcgcggattccttttccaaacacgcccat
gagatgatgctgaagtgcaaagacaaaaaatggtaccagttctga
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