Lates calcarifer (barramundi perch): 108881162
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Entry
108881162 CDS
T04895
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03018
RNA degradation
lcf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108881162
09123 Folding, sorting and degradation
03018 RNA degradation
108881162
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108881162
03041 Spliceosome [BR:
lcf03041
]
108881162
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108881162
mRNA degradation factors
5'-3' decay
Lsm complex
108881162
Spliceosome [BR:
lcf03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
108881162
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
108881162
NCBI-ProteinID:
XP_018528505
UniProt:
A0A4W6FJT4
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Position
LG17:complement(13570000..13588004)
Genome browser
AA seq
103 aa
AA seq
DB search
MADKEKKKKESIFDLSKYIDKPIRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMRDPDD
QLKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDG
NT seq
312 nt
NT seq
+upstream
nt +downstream
nt
atggcggataaagagaagaagaaaaaggagagcatcttcgacttgtcaaaatacatcgac
aagccgattcgtgtgaagtttcaaggaggacgagaggccagcggtgtcctaaaaggcttt
gatcctctgctgaacctggtgctggacggcacaatcgagtatatgcgtgatcctgatgac
cagctgaagctgacagaagacaccaggcagctggggctggtggtctgcagaggaacctcc
gtagtgctgatctgtcctcaggacggcatggaggccataccaaacccgttcatacagcag
caggacggctaa
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