Lates calcarifer (barramundi perch): 108881201
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Entry
108881201 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: receptor-type tyrosine-protein phosphatase S
KO
K06778
receptor-type tyrosine-protein phosphatase S [EC:
3.1.3.48
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
108881201
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lcf01009
]
108881201
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lcf04515
]
108881201
Enzymes [BR:
lcf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.48 protein-tyrosine-phosphatase
108881201
Protein phosphatases and associated proteins [BR:
lcf01009
]
Protein tyrosine phosphatases (PTPs)
Class I PTPs (Classical)
Receptor PTPs
108881201
Cell adhesion molecules [BR:
lcf04515
]
Immunoglobulin superfamily
Type II RPTP family
108881201
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Y_phosphatase
fn3
I-set
Ig_3
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
Ig_2
ig
Tc-R-P
PTP-SAK
DSPc
V-set
PTPlike_phytase
Y_phosphatase3
Ig_5
Ig_VEGFR-1-like_5th
DUF5849
Fn3_PTPRU
Fn3_assoc
MpPF26
Motif
Other DBs
NCBI-GeneID:
108881201
NCBI-ProteinID:
XP_050933294
UniProt:
A0AAJ8BKA1
LinkDB
All DBs
Position
LG17:complement(17251184..17424884)
Genome browser
AA seq
1924 aa
AA seq
DB search
MATSGAPRLSLPLLLPVTTLLLSLLLTSSHALSPPRFTKVPVDQIGVSGGVVSFVCQATG
DPKPRVSWNKKGKKVNSQRIETIEFDEGAGAVLRIQPLRAPRDENIYECVAENSEGEITV
NAKLSIIREDLLPPGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWYKDFLPIDPS
ASNGRIKQLRSGALQIENSEETDQGKYECVASNVEGVRYSSPANLYVRVRRVPPRFSIPP
TSQEIMPGGSVNITCVAVGSPMPYVKWMLNSEDLTPEDEMPVGRNVLELSSVRESANYTC
VAMSSLGIIEAVAQITVKSLPKPPGTPVVTETTATSVTITWDSGNPDPVTYYIIQYRAKS
PDSKYETVDDITTTRYSIGGLYPNTEYEIRVSAVNTIGQGPPSEPVETRTGEQAPASPPR
NIQAQIISQNTMMVRWEEPEEPNGQIKGYRVYYTMDDSQPMSLWQIHNVQDSIITTIQSL
VPQETYTIKVLAFTSVGDGPFSEPIHVKVLQGVPGQPSKFQVGAVSDTSIELTWEPAYEK
EGIINYELRYSEGSFGTQMKKTFGPTSSYVVEGLRPNTEYHFSLAAISNKGIGAFTNDIS
QKTLQAKPSAPPQDIKCSSTSSTALLVSWRPPPLESQNGDLAGYRVRYQVVGPSEGGGGD
DGEPAEEPTVPATEEQVLLQRLEKWTQYHVTVSAFTAIGPGPESEPLVCRTDEDVPGAPP
RRVEVEVLNSTALKVMWRSMTPGKQHGQIRGYQVHYVRVENGESRGLPLIKDVMLADAQE
MVIGGLKPDTTYSITVAAYTTKGDGARSKPKLVVTKGAVPGPPYLSVAQDSETSAVVRWD
APDLTNGMDLQGYRLQFGRKDVSPLATLEFAPQERQYSVGNIHRGATYLFKISAKSRGGF
GEEAVVELSVPENTPGGYPQINEGSNVTCCSVQLSWSPPVLAERNGVITEYTLAYKEAGA
AGAPRELRLPPSQSSYVLNSLKPNSAYDVKIRAHTSVGPGPYSPPIQYRTVAFDPTDVPK
NFTVKWATKTTVVLAWKFSDSRSPYKCTIEYNRQKMDVDARQMRVLVTGLRHNTTYEFRV
TCQESMDGGPRHRVVARTAPLILVRKPKLDITPETDNMLTMSFPPVDTKDVKNFYVVVVP
LKSTSGTVKNLKNPDEMDMEELLREVTPKRRSRRQLAQLDQRKPYITACFRQLPSSFTVG
SDHRHSSCENKPLEPGKEYVFFLLAELNATAGKMFATSPYTDTVTTPELGIDPLPVETGD
GLIWVVGPVLAVVFIICIVIAILLYKNRKRKESEPRTKCLLNNADITPHHPTDPVEMRRI
NFQTPDSGLSSPQSEADFDYESMMNHPPIPISELAEHTELLKANDNLKLSQEYESIDPGQ
QFTWEHSNLEVNKPKNRYANVIAYDHSRVILAPIEGITGSDYINANYIDGYRKQNAYIAT
QGPLPETFGDFWRMVWEQRAATVVMMTRLEEKSRIKCDQYWPSRGTETYGMTQVTLLDTI
ELATFCVRTFSLHKNGSSEKREVRQFQFTAWPDHGVPEYPTPFLAFLRRVKTCNPPDAGP
IIAHCSAGVGRTGCFIVIDAMLERIKHEKTVDIYGHVTLMRSQRNYMVQTEDQYSFIHDA
LLEAVACGNTEVAARSLYSYIQKLAQVESGEHVTGMELEFKRLANSKAHTSRFISANLPC
NKFKNRLVNIMPYETTRVCLQPIRGLEGSDYINASFIDGYRQQKAYIATQGPLAETTEDF
WRMLWENNSTIVVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYILREFK
VTDARDGQSRTVRQFQFTDWPEQGVPKSGEGFIDFIGQVHKTKEQFGQDGPISVHCSAGV
GRTGVFITLSIVLERMRYEGVVDIFQTVKMLRTQRPAMVQTEDEYQFCYHAALEYLGSFD
HYAT
NT seq
5775 nt
NT seq
+upstream
nt +downstream
nt
atggccaccagcggtgcccctcgcctctccttgccactcctgctgcctgtcaccacgctg
ctgctatcactgctgctcaccagctcccacgccttatcaccaccacggttcactaaagtt
cccgtcgaccagattggcgtctcagggggcgtggtctcctttgtctgccaagcgacgggc
gaccccaagccaagggttagctggaacaaaaaaggcaagaaggtcaactcccagcgtata
gagaccattgagtttgacgagggcgccggcgccgtactcagaatccaacctctcagagcc
ccgcgcgatgagaacatctacgagtgcgtggctgagaacagcgagggcgagatcacagtc
aatgccaagctgtccatcatccgagaggacctactcccaccgggcttccctaatatcgac
atgggccctcaactcaaagtggtggagcgcactcgaacagccaccatgctctgtgctgcc
agtggcaaccctgacccagagatcacctggtacaaagacttcctgcccattgacccaagt
gcaagtaatgggcgaatcaaacaactacgctcaggtgccttgcagatcgagaacagcgag
gagacagaccaggggaagtacgagtgcgtggcgtctaatgtggaaggcgtgcgctactcg
tcccctgctaacctttatgtgcgagtccggcgggtgcctcctcgcttctccattccacca
acgagtcaggaaattatgcccggtggcagtgtgaacataacgtgcgtggcagtggggtca
cccatgccttacgtcaagtggatgctgaactcagaggacttaacgccagaggatgagatg
ccagtgggcagaaacgttctcgaactgagcagcgttcgtgagtcagccaactacacctgc
gtggccatgagcagccttggcatcattgaagctgtggcgcagatcactgtcaaatctctc
cctaagcctccaggtacccctgtggttactgaaaccactgccaccagtgtgaccatcacc
tgggactcaggcaacccagacccagtgacttactatatcatccagtacagggccaagtcc
ccagacagcaagtatgagacagtggatgacatcaccactacacgttacagcatcggtggc
ctctaccccaacaccgaatacgaaatccgtgtctcagccgtcaacacaattggccagggt
cctcccagtgagccagtagaaaccaggactggagaacaagcccctgccagtccgccacga
aacattcaggcccagataatttcccaaaacaccatgatggtgcgctgggaggagcccgag
gagcccaatgggcagatcaagggataccgcgtttattacaccatggatgactcccagccc
atgagcctctggcagatccataatgtccaggatagcatcatcactactatccagagcctg
gttcctcaggagacatacacaatcaaagtcctagcattcacctcggtaggagatggaccc
ttctcagagcccatccatgtcaaagtattgcaaggagttccaggtcaaccatccaaattc
caggttggtgctgtgtctgacaccagcattgaactgacctgggaacctgcctatgaaaag
gagggaattataaattatgaacttcgctactcagaaggcagttttggcacacagatgaag
aaaacatttggacccacttcttcatatgttgtggaagggctccgcccaaacacagagtac
cacttctccctggcagccatttcaaacaaaggcatcggagccttcacaaatgacatatca
cagaagaccttgcaagccaagccctcagccccccctcaagacattaagtgcagcagcacc
agctccaccgccctgctggtaagttggcgccctccgcctttggagagtcagaacggtgac
ctggcggggtatagggtgcgctaccaggtggtgggcccgtcagaaggtgggggcggtgac
gatggggagcccgctgaggagcccacggtgcctgccaccgaagagcaggtgttgctgcag
cgattggaaaagtggacccagtaccatgtcaccgtgtccgccttcactgccattgggcca
ggccctgagagtgagcccctggtctgccggacagacgaagacgttccgggggctcctcca
aggcgagtggaggtggaggtcctcaactccacagcacttaaggtgatgtggcgctccatg
acaccaggcaagcagcacggtcagatccgtggttaccaggttcactatgtacgtgtggaa
aatggcgagtctaggggcctgcccctcatcaaggacgtcatgctggctgatgcccaggaa
atggtcattgggggactcaagccagacaccacttactccatcacggtggcagcatacacc
accaagggggatggagcccggagcaaacccaaactggtggtgaccaaaggggcagtgcct
ggcccaccctatctgtcagtggctcaggactcagagacatcagctgttgttcgctgggat
gctccagacttgaccaatggcatggacctgcaaggttaccggctccagtttggccggaaa
gatgtctctcctttggccacactggaatttgctccccaagaacgacagtactctgtgggc
aacattcatcggggagccacttatctctttaaaatctcagccaagagcagggggggcttt
ggggaagaggctgtcgtagaactcagtgtgcccgagaacacgccagggggataccctcaa
attaatgagggatccaatgtaacatgctgttcagtgcagctgtcctggtctccgccagtg
ctcgcggagaggaatggtgtaatcacagagtacactttggcctataaagaagctggtgct
gcaggagcaccaagggagctacgcttaccccccagccagtccagctacgtactcaacagc
ctcaaaccgaactcagcgtatgatgtgaaaatacgtgcacacaccagtgtaggcccaggg
ccctacagccctcctatccagtatcggacggtggcctttgatccaacagatgttccaaag
aatttcactgtcaagtgggccaccaagaccacagtggtccttgcatggaagttttctgac
agcaggtctccatacaaatgcacgattgagtacaaccgccagaagatggatgtggatgcc
aggcagatgagggtgctcgtcactgggctaaggcacaacaccacatatgagttcagggtg
acctgccaagaaagcatggatggcgggccaagacatcgtgtggtggccaggaccgcgcct
ctcatcctggtcagaaaacccaagctggacatcacgcctgagactgacaatatgctcacc
atgtcttttccaccggtcgataccaaggatgtcaagaacttttatgtggttgtggtgcca
cttaagagcacatctggaactgttaaaaacctgaagaaccctgatgagatggacatggaa
gagctgttgcgggaggtgaccccaaagcgtcgttcacgccgtcagctggctcagctggac
cagaggaagccctacatcacagcctgcttcaggcagctgccctccagcttcacagtggga
tctgaccaccgccacagcagctgcgagaacaagccgcttgaacctggcaaggagtatgtc
ttcttcctgctggctgaactcaatgccaccgccgggaaaatgtttgctaccagcccttat
actgacacagtgacgactcccgagctggggattgaccccctgccagtagagactggtgac
ggactcatatgggtggtgggcccagtcctggctgtggtctttatcatctgcatcgtcatc
gccattctattgtataaaaaccggaaaagaaaagagtcagagccacgcacaaaatgtctg
ctgaacaatgcagacatcacaccccaccaccctacagacccggtggagatgagacgcatc
aatttccaaactccagattctggtctgagcagtcctcagagtgaagcagattttgactat
gaaagtatgatgaatcatccccccatccctatatcagagctggctgaacacacggagctt
ctcaaggccaacgacaacctcaagctctcacaggaatatgagtctatcgatccaggccag
cagttcacctgggaacactccaacctggaggtgaacaagcccaaaaatcgttacgccaac
gtcatcgcctacgaccactcgcgagtcatcctggctcccatcgagggcatcacaggtagc
gactatatcaatgccaactacattgatggatacaggaagcagaacgcctacatcgccacc
cagggtcctttaccggagacgtttggggacttctggaggatggtgtgggaacagagagca
gccactgtggttatgatgaccaggctggaggagaagtcacggattaagtgtgaccagtac
tggcccagtcgtggcacagaaacctacggtatgacccaggtgaccctgctggacaccata
gaactggccactttctgtgtccgcactttctcattgcacaagaatggctctagtgagaag
cgggaggttcgtcagttccagttcacagcgtggcctgaccacggtgtaccagagtacccg
acccccttcctggccttcctccgcagggtgaagacctgcaacccgcctgatgctggaccc
atcatcgcccactgcagtgcgggtgtgggccggacaggctgctttatcgtcattgacgcc
atgctcgagcgcatcaagcacgagaagacggtcgacatttatggccacgtgacgctcatg
cggtcacagcggaactacatggtgcagacggaggaccagtacagcttcattcacgatgca
ctgctggaggcggtggcctgtggcaacaccgaggtggctgccaggagcctctactcctac
atccagaagctggcccaggtggagagcggcgagcacgtcaccggcatggagctagagttc
aagcgtttggccaactccaaagcccatacgtcgcgcttcatcagtgccaacctcccctgc
aacaagttcaagaatcggctggtcaacatcatgccctatgagaccacacgcgtctgcttg
cagccaatcagaggcctggaaggatctgactacatcaatgccagtttcattgatggatac
aggcaacagaaagcctacattgccacacagggccctcttgcagagactacagaagacttc
tggagaatgctctgggagaacaactctaccattgtagtcatgttgaccaaactgagagag
atgggacgggaaaagtgtcaccaatactggcctgcagagcgctctgccaggtatcagtac
tttgttgtggatcccatggctgagtacaacatgccccagtacatcctccgagagttcaag
gtcacagatgccagggatggccagtccaggacagtaaggcagttccagtttactgactgg
ccagagcaaggcgtccctaaatctggggagggatttattgatttcattggccaggtgcat
aaaaccaaggagcagtttggacaggatggaccaatctctgtccactgcagtgctggcgtg
ggtaggactggagtcttcatcaccctcagcatcgtcctggagagaatgcgctatgaaggc
gtggttgacatcttccagacagttaagatgcttcgaacacagaggccagccatggtccag
actgaggatgagtaccaattctgctatcatgcagctctggagtacttaggaagctttgat
cactatgcaacgtaa
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