Lates calcarifer (barramundi perch): 108881320
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Entry
108881320 CDS
T04895
Symbol
rnf220b
Name
(RefSeq) E3 ubiquitin-protein ligase RNF220 isoform X1
KO
K25174
E3 ubiquitin-protein ligase RNF220 [EC:
2.3.2.27
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108881320 (rnf220b)
Enzymes [BR:
lcf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108881320 (rnf220b)
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108881320 (rnf220b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNF220
zf-C3HC4_2
zf-C3HC4_3
zf-RING_5
zf-C3HC4
Pox_A_type_inc
zf-RING_2
Endonuclease_7
zf-RING_UBOX
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
108881320
NCBI-ProteinID:
XP_018528766
UniProt:
A0A4W6FG87
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All DBs
Position
LG17:13762780..13791997
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AA seq
560 aa
AA seq
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MDLHRPFKMDSPSYLPAPLASPALMVLASTAEAGRDASVPCQAPRPFGVPASVEKDLHLP
FPSASYTFTSMYQRQGPMSGTFPSRDFPASLLHLHPQFTPPNLDCSTLGMLNHSGVGAFR
PFSSPQEEREPGVYQSAFTPAKRLKSCFPEVEGKEFDFGSPGGSLKAGEDSGRKLFSMSG
LLSDGEASSSPEERKEHSKVKGLYDAQAPMCPVCQSILRPGELQEHMEQELAKLAQLQIS
ATPAQHSHLMRTPKSLSLSLHIKREGGSPTSPPRPAEDAHSDRYQTFLRVRANRHTRLNV
DDLCWCRCYVKSAPLRPHSAGAHLDCTQAVRIGKLKRRKPEEGQEGSADLAPLEDEWNER
RRIQMTSIVGGFKGAMLVSTTSKECRDSDADLDVDGDDTLEYGRAQYTETDVIPCSGENS
KETIVNSSSSTLPDSRVNLEYSKWLNDGSPSTSSGEKVDGSTVALPKTCKNTEIETLSED
STLTTLDALKARIRDLEKQLSKGDRFKCLICMDTYTTPLTSIQCWHVHCEECWLRTLGAK
KLCPQCNTITSPGDLRRVYL
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atggaccttcaccgccccttcaagatggacagcccctcctacctgccagctccactggcc
tcccctgccctgatggtcctcgcctccaccgctgaggcaggccgtgacgcctccgtcccc
tgccaggcgcccaggccctttggcgtcccagcgtccgtggagaaggacctccacctcccc
ttcccttcggcctcctacacattcacctccatgtaccagcgccagggccccatgtcaggc
accttcccctcccgagacttcccagcatccctgctccacctgcacccccagttcacccca
ccgaacctggactgctccaccctgggtatgctcaaccacagcggggtgggcgccttccgg
cccttctcctccccacaggaggagagggagcccggggtttaccagtcggctttcaccccc
gccaagaggctgaaaagctgcttcccagaggtggaggggaaggagtttgacttcggctcc
ccgggaggctccctcaaagctggggaggactcgggaaggaagctgttctccatgtctggc
ctgctgtctgacggagaggcttcatcgagcccagaggagcgcaaggagcacagtaaggtg
aaaggtctctacgatgctcaggccccaatgtgtccagtctgccaatctattctgcgacca
ggagagctgcaggaacacatggagcaggagttagccaaactggcccagctacaaatcagt
gccactccggctcagcacagccacctcatgaggaccccaaagtctctctctctttctctg
catataaagcgtgaaggaggttctcccacctcgccccctcggccggcggaggacgcccac
tctgaccgataccagacgtttctccgtgtgcgggccaacagacacacaagactaaatgtc
gatgacctctgctggtgcaggtgctacgtcaaatctgccccattacgcccccacagcgca
ggagcccacctagactgcacacaagctgtcaggattggaaagctgaagaggaggaaacca
gaggagggacaggagggttcagcggacttggcaccattggaggacgagtggaatgagagg
agaaggatacagatgacatctatagttggagggtttaaaggagcaatgctggtgagcaca
acttctaaggagtgtcgagacagcgacgcagacctggacgtggatggagacgatactctg
gagtacggcagagcgcaatacacggagacagacgtgatcccctgctcaggagaaaactcc
aaggagacgatagtgaacagcagcagcagcacgttgcctgactccagagtaaacctagaa
tattccaaatggttaaatgatgggagtccatctaccagcagtggagagaaagtggatggc
agcacagtcgctctgcccaaaacctgcaaaaatactgagatagagacgctctcagaggac
tccacgctgactactctggatgcacttaaagctcggatacgggatttggagaaacagttg
tctaaaggagacagatttaaatgcctcatctgcatggacacatacacgactccgctcacc
tccatccagtgctggcatgttcactgtgaggagtgttggcttcggacactgggagcaaag
aagttgtgtcctcagtgcaacaccatcacctcacctggagacctgaggcgggtttacctg
tga
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