Lates calcarifer (barramundi perch): 108881323
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Entry
108881323 CDS
T04895
Symbol
hnrnpm
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein M isoform X2
KO
K12887
heterogeneous nuclear ribonucleoprotein M
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108881323 (hnrnpm)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcf03041
]
108881323 (hnrnpm)
Spliceosome [BR:
lcf03041
]
Common components
Common spliceosomal components
hnRNP proteins
108881323 (hnrnpm)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_MARF1
RBD_DEAH11
Lipoprotein_18
DUF7552
Motif
Other DBs
NCBI-GeneID:
108881323
NCBI-ProteinID:
XP_018528773
UniProt:
A0AAJ7PK04
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All DBs
Position
LG17:complement(13730915..13738495)
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AA seq
700 aa
AA seq
DB search
MSNEQVENTTEKAGQQQPTPPPQQQQQQQQQGEVNGKAKHEPNPSRKERPQKRGGGGRYE
PYGNANKRYRVFVSNIPYDVKWQALKDLMKEKVGEVTYVEHLMDAEGKSRGCAVVEFRTE
ELMKKAVEKVNKHNLNGRPLKVKEDPDGVIAQREINKAQGGGPPGGHGGMGGMGGMGGMD
RMNMDRMGPGPNGPMVSIPPSLMNNPNIPNEIIHGLQAGRIGSTVFVANLDYKVGWKKLK
EVFSMAGMVVRADILEDKDGKSRGMGTVTFDMPIEAVQAVSMFNGQLLFNRVMHVKLDEK
SLPKDFGPPDRAAALPRGLSGVGLGLGPGGQPIDAAQLNRGGGGGGGMGNMGPGGMDGMG
FGNMGGRMGGGGGGGGMDNFGGMNNMDRFGSSGMGRMNEMDRGIGGAFDREFGRNEMGMS
RNNFGDSFERGMGNSLGMDRMNSGMDRLGGSMDRMAGMDRMGMDRMDRVSDLDRLGSGFD
RMGSGMDRLGPSMDRLGPGLDRMSSSMDRLGPAGFDRLGPSGLDRMGSSLDFGSPMSMDR
MGNTGLDRMASSFDRMGSAGGIDRFPSGGLDRMSSGMDRMGSGGVGGQFDRSSDMDRGFG
GNSFGGAGAGGPGTGGGNVRKGCQIFVRNLPFDFTWKMLKDTFNTCGMVQYADIKMENGK
SKGCGVVRFDNPETAERACRTMNGYRLNGREIDVRIDRNA
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacgagcaggtcgaaaacactaccgagaaagcaggccagcagcagccgacgccg
ccgccgcagcagcagcagcagcaacaacagcagggggaagtgaatgggaaagccaagcat
gagccgaatccaagcaggaaggagaggccccagaagagaggtggaggcgggcgctacgaa
ccctatggaaacgcaaacaaaagataccgcgtttttgtcagcaacatcccgtatgatgtg
aaatggcaagccctcaaagacctgatgaaagaaaaagtgggtgaggtaacgtacgtggaa
cacttaatggacgcagaaggcaaatcgaggggttgtgctgttgttgagtttaggactgaa
gagctaatgaagaaagcagtggagaaggtcaacaagcacaacctcaatgggcgaccccta
aaagtgaaggaggaccccgatggtgtgattgctcagagggagatcaataaagctcaaggt
ggaggccctccaggaggtcatggcggaatgggagggatgggaggaatgggtggcatggat
cgcatgaacatggatcgaatgggccctggaccaaatggccctatggtcagcattcctccc
agcctgatgaacaaccccaacattcccaacgagatcatccatggtctccaggctggcagg
attggcagcactgtctttgtggctaatcttgactacaaagtgggttggaagaagctgaaa
gaggtgttcagtatggctggcatggtggtgagggctgacattctggaggacaaggatggg
aaaagcagaggcatgggcacagtgacgtttgatatgcccattgaagcagtccaagctgtc
tctatgttcaatgggcagctgttgttcaacagagtcatgcatgtcaaactggatgagaaa
tccctgcccaaagattttggaccaccagacagagctgctgctcttccccgtggtctgagt
ggtgttggtctgggtctgggacctggtggtcagcccattgatgctgcccaactcaacaga
ggaggcggtggaggtggaggaatgggcaacatgggccctggaggaatggacggaatgggc
tttggcaacatgggaggtcgtatgggtggaggaggaggaggaggaggaatggacaacttt
ggaggaatgaacaacatggatcgttttgggtcttcagggatgggcagaatgaatgagatg
gaccgtgggattggtggtgcttttgacagggagtttgggcgaaatgaaatgggaatgtct
cgcaataattttggggactcctttgaaagaggaatgggaaactccctgggtatggaccgc
atgaactctggaatggaccggctgggaggcagcatggaccgcatggcaggaatggaccga
atgggcatggacaggatggaccgcgtgtctgacctggacaggctgggttctgggttcgac
cggatgggctcagggatggaccgactggggcccagtatggacagactaggacctggcctg
gaccgtatgagctccagcatggaccgcctcggcccagctgggtttgatcgcttaggcccg
tctggtttggatcgcatgggttccagcctggatttcggctccccaatgagtatggatcgc
atgggcaacaccgggcttgacagaatggccagcagcttcgaccgcatgggctctgccgga
ggtatcgaccgcttcccttcaggtggccttgatcgcatgagctctggcatggaccggatg
ggatctggaggtgttggcggccagtttgatcgctcctctgacatggatcgtggatttggt
ggtaattcctttggaggggccggagctggagggcctggaactgggggaggcaacgtgagg
aaaggttgccagatcttcgtcagaaatctgccatttgacttcacctggaagatgctgaag
gacaccttcaatacatgtggcatggtccagtatgctgatattaagatggagaatggcaag
tccaagggctgtggtgtggtccgtttcgacaaccctgaaactgctgagcgcgcctgcagg
acgatgaatggctaccggctgaacggaagagagattgacgttaggattgataggaatgca
taa
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