Lates calcarifer (barramundi perch): 108881325
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Entry
108881325 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: fibrillin-2b
KO
K23342
fibrillin 2/3
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108881325
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lcf00536
]
108881325
Glycosaminoglycan binding proteins [BR:
lcf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108881325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_CA
cEGF
EGF
FXa_inhibition
hEGF
TB
EGF_3
Fibrillin_U_N
Plasmod_Pvs28
EGF_FBN_1st
EGF_MSP1_1
Motif
Other DBs
NCBI-GeneID:
108881325
NCBI-ProteinID:
XP_018528778
UniProt:
A0AAJ7PJX9
LinkDB
All DBs
Position
LG17:13624131..13690338
Genome browser
AA seq
2885 aa
AA seq
DB search
MGSGKLAQVLLGWAAVCLAAVNVACGQTGNGPYQANRFTSTTDQREVQRVRRRGQETLRG
PNVCGSRFHSYCCPGWKTLPGGNQCIVPICRNSCGDGFCSRPNMCTCSNGQLSPSCGAGA
GVQSCNVRCMNGGSCSEDSCSCPKGYTGSHCGQPVCENGCQNGGRCIGPNRCACVYGFTG
PQCERDYRTGPCFTQVNNQMCQGQLSGIVCTKTLCCATIGRAWGHPCEQCPAQPHPCRRG
FIPNIRTGACQDVDECQAVPGLCAGGNCINTVGSYECKCPAGHRQSETNHKCEDIDECST
IPGVCDGGECTNTAGSYVCTCPRGYISSTDGSRCVDQRAGTCFSALANGRCAAELSGQFT
KMQCCCDTGRCWALGQIPEMCPVRGSDAFRRLCIVGVPQGHGLPHGYPNGHFPGNGNGFG
YGHKFPSVPSSNGNGGIGGNGGGSFGGNGGSFGGNGGGLLTHQQIGTVSVNDSIDVCKHF
TNLCLNGRCIPTPTSYRCECNMGYKQDVRGECIDVDECVSNPCINGDCVNTPGSYHCKCH
EGYQGTPTKQACNDIDECIVNGVMCRNGRCVNTEGSFQCICNAGFELTPDGKNCIDHDEC
ATTNMCLNGMCINEDGSFKCICKPGFALAANGRYCTDIDECQTPGICMNGRCINSEGSFR
CECPPGLAIDVDGRVCVDTHMRTTCYGAIKMGTCSRPFPGAVTKSECCCANPEHGFGEPC
QPCPSRNSAEFQAVCSSGIGITADGRDINECALDPDICQNGICENLRGSYRCICNIGYES
DTSGKNCVDINECLVNRLLCDNGLCRNTPGSYTCSCPKGFVFKPDSETCEDINECESSPC
INGACRNVAGSFNCECTHGSKLDSTNTICVDSMKSTCWLTIQDNRCEVNINGATLKSECC
STLGAAWGSPCEPCEIDTACSRGFARMKGLVCEDINECEVFPGVCTNGRCVNTQGSFRCE
CAEGLTLDSTGRTCVDMRSEQCFLKWHEDECGEPLPGRYRVDMCCCSVGAAWGIDCEECP
KPDTPEYKAICPRGTGFANRGDILTGRPFYKDVNECKVFQGLCTYGTCRNTIGSFKCRCN
SGFALTAEERNCTDIDECRISPDLCGQGTCVNTPGSFECECFEGYESGFMMMKNCMDIDE
CERNPLLCRGGTCLNTEGSYECECPTGHSLSTDGSACEDVNECQLSDNLCKNGQCVNMPG
TYQCTCDTGYQATPDRQGCVDIDECTIMNGGCETHCTNSEGSYECSCSEGYALMPDLRTC
ADIDECEETPDICDGGQCTNIPGEYRCLCYDGFMASMDMRTCIDVNECDLNPNICLHGDC
ENTKGSFICHCQLGYFVKKGSTGCTDIDECEIGAHNCDMHAACINVPGSFKCRCRDGWVG
DGIKCVDQDECSAEDHNCNPNADCVNTPGSYRCTCKEGFNGDGFSCSDMDECADNVNLCE
NGQCLNAPGGYRCECEMGFTPTEDSKACQDIDECNFQNICVFGTCQNLPGMFRCVCDDGY
ELDRSGGNCTDINECADPVNCINGLCVNTPGSYLCNCPADFELNPTGVGCVDTRVGNCFL
DILARGDGGISCSAEIGVGVTRASCCCSLGGAWGNPCELCPAPNSTEYKTLCPGGEGFRP
NPITVILEDIDECQELPGLCQGGNCVNTFGSFQCECPAGYYLNEETRICEDIDECTTHIG
ICGPGTCYNTLGNYTCVCPPEYMQVNGGNNCMDMRKSVCYRNFNDTCENELSFNMTKKMC
CCAYNVGKAWNKPCEACPTPATSEYQLLCGNQAPGFIIDIHTGKPIDIDECREIPGICAN
GVCINQIGSFRCECPMGFSYNNILLICEDIDECNSGDNLCQRNANCINIPGSYRCECSPG
FKLSPSGACVDRNECQEIPNVCSHGECIDTQGSYRCLCHNGFKATADQTMCMDIDECDRQ
PCGNGTCKNTVGSYNCLCFPGFELTHNNDCMDIDECSALQGQVCRNGQCINGLGSFQCLC
HEGYENTPDGKNCVDINECVSLPGTCSPGTCQNLDGSFRCICPPGYEVQNDQCIDINECE
EPNICQFGTCTNTPGSFQCSCQPGFVLSDNKRRCYDTRESFCFTKFDAGKCSVPKAFNTT
KAKCCCSKMPGEGWGLPCELCPRDTDAAFNTLCPFGHGALPGPGDAREDMNECLDNPGIC
RNGICINTDGSFRCECPFGYNLDYTGVNCIDTDECSIGNPCGNGTCTNVVGGFECSCQEG
FEPGPMMTCEDINECSQNPLLCAFRCVNTFGSYECMCPAGYVLRDDQRMCRDQDECSEGL
DDCDSKGMTCKNLIGTFMCICPPGMQRRPDGEGCMDLNECRAKPGICKNGRCVNTVGSYR
CECNDGFEPSSTGTECIDNRKGYCFTEVLQTMCQQSSTNRNSVTKSECCCNIGRGWGSQC
ELCPLPGTVQYKKMCPLGPGYTTDGRDINECQVTPDLCRNGQCINTIGSFRCHCNVGYKT
DFTATSCVDMDECALSPKPCNFLCKNTEGSYLCSCPRGYSLQPDGKTCKDLDECSTKQHN
CQFLCVNTIGGFTCKCPPGFTQHQTACIDNNECMAQSTACGSRASCVNTPGSFNCECSKG
FSLDSSGLECEDVDECSSNHRCQHGCQNMLGGFRCGCPQGYVQHYQWNQCVDENECQAGS
VCGSASCYNTLGSFKCVCPSGFDFEQNAGGCQDVNECSTGTNPCIYGCSNTDGGYLCGCP
GGFYRAGQGHCITGSGFPGQIAEGEEDDSLSPEACYECKINGGGKGGRHRRNTDGNELNQ
EPVVSMASMDTQTSIPMNLSLASLHNKEPLLELLPALQPLEHHVRYVITHGNANEHFRLL
ERRDGKSVLRLGKRPPPPGSYRLEIASLRLFGPRRLHQLEEQHDIDYLQGEIGDALRIKL
HIHLH
NT seq
8658 nt
NT seq
+upstream
nt +downstream
nt
atgggatcggggaagctggctcaggtgctgctgggatgggcagcggtttgtcttgcagcg
gtcaatgtggcgtgcggtcaaactgggaatggaccgtaccaagctaaccgcttcaccagc
accacggaccaaagagaggtgcagcgggttcgacgccgtggccaagagacactgagaggg
cccaatgtgtgtggctctcgcttccattcatactgctgtccaggctggaagactctgcca
ggagggaaccagtgtattgttccaatttgcaggaattcatgtggtgatggcttctgttcc
agacccaacatgtgtacctgctcaaatggccagctctctcccagctgtggagcaggagca
ggagttcagtcctgtaacgtcaggtgtatgaatggcggcagctgctcagaggactcgtgc
tcgtgcccgaagggctacacaggcagccactgtggacagcctgtgtgtgagaacggctgc
cagaacggtgggcgctgcatcgggcccaacagatgtgcctgtgtctacggtttcactggt
ccgcagtgcgagagagactaccggactgggccatgtttcacccaggtgaacaaccagatg
tgtcagggccagctcagtggaatcgtctgcaccaaaaccctctgctgcgctaccattggc
cgagcatggggccacccctgtgagcagtgccccgcccagccacacccctgcagacgaggc
tttatccccaacatccgcactggagcctgccaagacgtggatgagtgccaggcagtgcca
ggcctctgtgctggaggtaactgcatcaacactgtgggatcctacgaatgtaaatgcccc
gccggtcaccgtcagagtgaaaccaaccacaaatgtgaagatattgatgaatgcagcacc
atccctggtgtgtgtgatgggggagaatgcaccaacactgctggtagctatgtctgcacc
tgtccacgaggctacatctccagcacagatggctccagatgtgtggaccaacgtgcgggc
acctgtttctctgctctggctaacggccgctgtgctgcagagctgagcggtcagttcacc
aagatgcagtgttgctgcgacacaggacgctgctgggctttgggacagatccctgagatg
tgcccggtcaggggttctgacgcgttcaggcgtctgtgtattgtgggtgttccccaggga
cacggtctccctcacggttaccccaacggacacttccctggcaacggcaatggtttcggc
tatggtcacaagttccccagtgtgcccagcagcaatggtaacggaggcatcggtggcaat
ggcggaggaagctttggagggaatggtgggagctttggaggcaatggaggaggacttctt
acccaccaacaaataggcactgtttctgtgaacgactctatcgatgtgtgcaaacatttt
accaacctctgtcttaatggacgctgcattcctacacctacaagctaccgctgtgaatgc
aacatgggctacaaacaagatgttcgtggggagtgtattgatgtggatgagtgtgtgagt
aatccatgtatcaatggagactgtgtcaacacacctggatcgtaccactgcaaatgccac
gagggttaccagggaacacctaccaaacaagcctgtaatgatatcgatgagtgtatagtg
aatggagtgatgtgtcgcaacggccgctgtgtcaacacggagggaagctttcagtgtatc
tgcaatgctggctttgagctcactcctgacggaaagaactgcattgatcacgatgaatgt
gctaccaccaacatgtgtctcaatggcatgtgcatcaatgaggacggcagctttaagtgc
atctgcaagcctggctttgcactggctgcaaacggacgctactgtaccgacatcgatgag
tgtcagacacctggcatttgtatgaacggccgctgcatcaactctgagggctccttccgc
tgtgagtgcccaccaggcctggccattgatgtagacgggagagtgtgtgtggacacacac
atgaggaccacctgctacggtgccataaagatgggcacctgctcgcgtccgttccctggt
gcggtgaccaagtctgagtgctgctgtgccaatcctgaacatggctttggagagccttgt
caaccctgcccctccagaaactcagccgagttccaggctgtgtgcagcagtggcattggc
atcacagctgatggcagagacatcaatgagtgtgccctggacccggacatttgtcagaac
ggcatttgcgagaacctgagaggaagctaccgctgtatctgcaacatcggctatgaatct
gacaccagtggcaagaactgtgttgacatcaatgaatgtctggtgaaccgtctgctctgt
gacaatggcctctgcagaaacactcctggctcctacacctgctcctgtcctaaaggattt
gtcttcaaacctgactcagagacgtgcgaagatatcaacgaatgtgagtccagcccgtgc
atcaatggagcgtgtcgcaacgtggccgggtccttcaactgcgaatgcacccatggcagc
aagctggactccacgaacaccatctgcgtggacagtatgaagagcacttgctggctgacg
atacaggacaaccgctgcgaagtcaacatcaacggagccacactgaagtctgagtgctgc
tccacgctgggagccgcctggggcagcccctgtgaaccctgcgagatcgacactgcctgt
tctcgagggtttgctcgtatgaagggcctcgtctgcgaagacattaatgagtgcgaggtg
ttccctggagtgtgcacaaacggccgttgtgtgaacacccagggctcgttccgctgcgag
tgtgccgagggtctcaccttggacagtactggacgcacgtgtgtggatatgcgcagtgag
cagtgcttcttgaagtggcacgaggatgagtgtggtgagccactgccggggagatatcgt
gtggacatgtgttgttgttcggtgggtgctgcgtggggtatcgactgcgaggagtgtccc
aaaccagacacacctgagtacaaagccatttgccccagagggaccggctttgccaacaga
ggagatattctgaccggcaggccgttctacaaggatgtgaatgagtgtaaggtgttccag
ggtctgtgtacttatggaacgtgcagaaacaccattggcagtttcaagtgtcgctgcaac
agcggctttgctctgaccgctgaagagaggaactgcacagacatcgacgagtgtcgcatc
tcccctgacttgtgtggtcaaggcacctgcgtcaacacacccggcagcttcgagtgcgag
tgctttgagggctacgagagcggcttcatgatgatgaagaactgcatggacattgatgag
tgtgagagaaaccccctgttgtgtcgtggaggaacctgtctgaacacagaggggagttat
gagtgcgaatgtcccaccggacactcgctcagcaccgacggctctgcttgtgaagatgtg
aatgagtgccagctgagcgacaacttgtgcaagaatggccagtgtgtcaacatgccagga
acctaccagtgcacctgtgacaccggttaccaggcaacaccggaccgacagggctgtgtt
gatattgatgagtgtaccattatgaacggaggctgtgagacccactgcaccaactcagag
ggcagctacgagtgcagctgcagtgagggctacgctctcatgcctgatctcaggacgtgt
gcagatattgatgagtgtgaggagacaccagacatctgtgacggaggccagtgtaccaac
attcccggggaatatcgctgtctgtgttacgatggcttcatggcctccatggacatgagg
acatgtatcgatgtgaacgagtgtgatctgaacccaaacatctgtctccatggcgactgc
gagaacaccaaaggctccttcatctgccactgtcagctgggatactttgtcaaaaaggga
tccacgggctgcacagatattgatgagtgtgagatcggggctcataactgcgacatgcac
gccgcctgcatcaatgttcccggaagctttaaatgtcgctgtcgagatggttgggtggga
gatggcatcaagtgtgtggatcaggatgagtgctctgcagaggaccacaactgcaaccca
aacgcagactgtgtcaacacaccaggatcctacaggtgtacatgcaaagagggctttaat
ggagatggcttttcctgctctgacatggatgagtgcgcagacaatgtgaacctgtgcgag
aatggccagtgtctgaacgctccaggtggctaccgctgcgagtgtgagatgggcttcacg
cctacagaagacagcaaagcctgtcaagacatcgacgagtgtaatttccagaatatctgc
gtgtttggaacctgccagaaccttccagggatgttccgctgtgtgtgcgatgatggttac
gaactggaccgcagcggaggaaactgcactgacatcaacgagtgtgcagaccccgtgaac
tgcatcaatggactgtgtgtgaacactccaggcagctatctgtgtaactgcccagctgac
tttgaactcaaccccaccggagtgggctgcgtggacacccgcgttggcaactgcttcctg
gatatcctcgcacgcggtgatggaggaatctcctgcagcgccgagatcggagtcggagtg
acccgtgcgtcctgttgctgctccctgggaggagcctggggaaacccctgtgaactgtgc
cccgcccctaattccactgagtacaagactctttgtcctggaggagagggattcagaccc
aaccccatcactgttatcctagaagatattgatgagtgccaggagctgccaggtctctgc
cagggtggaaactgtgtcaacaccttcggcagtttccagtgtgagtgtccagcaggctac
tatctcaacgaggagactcgcatctgtgaggatattgatgagtgcactactcacattggg
atctgtggacctggtacctgctacaacactctgggcaactacacctgcgtgtgtccacct
gagtatatgcaggtcaacggaggaaacaactgcatggacatgaggaagagtgtgtgttac
cgtaacttcaacgacacgtgtgagaatgagctgtctttcaacatgaccaagaagatgtgc
tgctgtgcctacaatgttggaaaggcctggaacaagccatgcgaggcctgtcctactcct
gctacctctgagtaccagttactgtgcggtaaccaggctcctggcttcatcattgacatc
catactggcaagccgattgacatcgatgagtgtagggagatcccaggaatctgtgccaat
ggagtgtgtataaaccagattgggagcttccgttgtgaatgtcccatgggcttcagctac
aacaacatactgctcatttgtgaagatattgatgagtgtaacagcggggacaacttgtgc
caacgcaacgccaactgtatcaatattccaggcagctaccgctgcgagtgctcgccaggc
ttcaaactgtcccccagcggggcctgtgtggaccgtaatgagtgccaggagattcctaat
gtgtgcagccatggagagtgtattgacacacagggcagttatcgctgtctctgccacaac
ggtttcaaggccaccgctgaccagaccatgtgcatggacattgatgagtgtgacaggcaa
ccatgtggtaacggtacctgtaaaaacacagtgggctcctacaactgtctctgcttcccc
ggcttcgagctcacacacaacaatgactgcatggacatagatgagtgcagcgccctccag
ggccaagtgtgcaggaacggacagtgtatcaacggactcggttccttccagtgtctctgc
cacgagggttatgagaacactccagatgggaagaactgtgtcgatatcaacgagtgtgtg
agtctgcctggcacctgttctccgggaacctgtcagaatctggatggatccttcaggtgt
atctgtcctcctggatatgaagtgcaaaatgaccagtgtatagatatcaacgagtgtgag
gagcccaacatctgccagtttggcacatgtaccaacacccccggcagcttccagtgctca
tgccagccgggcttcgtgctgtccgacaacaaacggcgctgctacgatacaagagagagc
ttctgtttcactaaattcgacgctggcaaatgctccgtccccaaagccttcaacaccacc
aaggccaagtgctgctgcagcaagatgcctggagaaggctggggactcccctgcgagctg
tgcccacgagatactgatgctgcttttaacaccctgtgtcccttcggccacggagccctg
cctggaccgggtgatgcccgtgaagatatgaacgagtgtctggataacccaggcatctgc
cggaatggtatctgcatcaacacagatggttccttccgctgcgaatgccccttcggatac
aacctggattacactggagtcaactgtattgacactgatgagtgctccataggaaaccca
tgtggaaatggaacctgcaccaatgtggtcggcggtttcgagtgttcgtgccaagagggc
tttgaacccgggcccatgatgacttgtgaagatatcaatgagtgctcccagaatcctctg
ctgtgcgccttccgttgcgtcaacaccttcggttcctatgagtgtatgtgtcccgccggc
tacgtgctgcgagacgaccaacgcatgtgcagagaccaggacgagtgttcagagggtctg
gatgactgcgactccaagggcatgacctgcaaaaacctaatcggtaccttcatgtgcatc
tgccctcctggcatgcagcgccgaccagatggagagggatgtatggacctgaacgagtgt
cgcgccaagcctggcatctgcaagaacgggcgttgcgtcaacacggtgggaagctaccgc
tgcgagtgtaacgatggctttgagcccagctccactggaaccgaatgtatcgacaaccga
aagggctactgtttcactgaggttttgcagacgatgtgccagcagtcatccaccaacagg
aacagtgtgaccaagtccgagtgctgctgcaatataggccgaggctgggggtcacagtgt
gagctctgcccgctgcccggcaccgtacagtacaaaaagatgtgcccactcggacctggc
tacaccaccgacggaagagacatcaacgagtgccaggtgacgccagatctgtgccgaaac
ggtcagtgcatcaacaccatcggctccttccgctgccactgtaatgtgggatacaaaacc
gacttcaccgcaacctcctgcgttgatatggacgagtgtgctctgtctccgaagccctgt
aacttcctgtgtaaaaacacagaaggcagctacctctgctcctgccccagaggatacagc
ttacagccagatggaaagacctgcaaagatctggatgagtgttcaaccaagcagcataac
tgccagttcctctgtgtcaacaccatcggaggcttcacctgcaagtgtccccctggcttc
acccagcaccagactgcctgcatcgacaacaatgagtgtatggctcagagcacagcgtgc
ggttcccgggcctcttgtgtcaacacgcccggtagcttcaactgtgaatgctctaaaggt
ttctccttggacagctcaggcttggaatgcgaagacgtggacgaatgtagcagcaaccac
cgctgtcagcacggctgtcagaacatgctgggaggtttccgctgtggctgtcctcaaggc
tacgtacaacactaccagtggaaccagtgtgtggatgaaaacgagtgtcaggcaggatca
gtgtgcggctctgcctcctgctacaacacgctgggcagcttcaagtgcgtttgtccctct
ggctttgactttgagcagaatgctggtggctgccaagacgtgaacgaatgttccacgggc
accaatccctgcatctacggctgctccaacaccgacggaggctacctgtgcggctgtccc
ggaggtttctacagagccggacagggtcattgtataacaggctcagggttccctggacaa
attgcggagggtgaggaagatgacagtctctctcctgaggcctgctacgagtgtaagatt
aacggaggaggaaagggcggacgacacaggcgcaacactgacggaaatgagctcaaccag
gagccggtggtgagcatggccagcatggacactcagacctccatccccatgaacctctcc
ctggcctcgctgcacaacaaggagcccctgctagagctcctgcccgccctgcagcccctg
gagcaccacgtgcgttacgtcatcacccacggcaacgccaacgaacacttccgcctgctg
gaacgccgcgacggaaagagcgtgcttcggctcggcaagaggccgccaccgccaggatcc
taccggttggagatcgccagcctgcggctgttcgggccccggagactacaccaactggag
gagcagcacgacattgactacctacaaggagaaataggagacgctctgcgcatcaagctc
cacatccacctgcactga
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integrated database retrieval system
