Lates calcarifer (barramundi perch): 108881353
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Entry
108881353 CDS
T04895
Name
(RefSeq) fizzy-related protein homolog isoform X1
KO
K03364
cell division cycle 20-like protein 1, cofactor of APC complex
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04110
Cell cycle
lcf04120
Ubiquitin mediated proteolysis
lcf04914
Progesterone-mediated oocyte maturation
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108881353
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
108881353
09150 Organismal Systems
09152 Endocrine system
04914 Progesterone-mediated oocyte maturation
108881353
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108881353
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
APC/C
Target recognizing subunit
108881353
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
Beta-prop_EML_2
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR19_1st
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR90_POC16_2nd
WDR55
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
eIF2A
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_RIG_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
ELYS-bb
Ge1_WD40
WD40_RFWD3
Beta-prop_SPT8
Motif
Other DBs
NCBI-GeneID:
108881353
NCBI-ProteinID:
XP_018528824
UniProt:
A0A4W6FUK4
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Position
LG17:complement(13114276..13119095)
Genome browser
AA seq
495 aa
AA seq
DB search
MDPEYEHRLLRQINIQNDNLSPVKMTQSLYSRTPTGSPLSSPSKLGDRFIPTRAGANWNI
NFHRINENEKSPSQNKKTKDASTDNIKADGLAYSALLKNELLGAGIEKIQDPQTEDRRLQ
PSTPEKRSLFTYSLNTKRLSPDDGTNISPYSLSPVSNKSQKLLRSPRKPTRKISKIPFKV
LDAPELQDDFYLNLVDWSSLNVLSVGLGTCVYLWSACTSQVTRLCDLSVEGDSVTSVGWS
ERGNLVAVGTHKGYVQIWDAGAGKKLFALEGHTARVGALAWNADQLSSGSRDRMILQRDV
RTPPLQSERRLQGHRQEVCGLKWSTDHQLLASGGNDNKLLVWNHSSLSPVQTYMDHLAAV
KAIAWSPHQHGLLASGGGTADRCIRFWNTLTSQPLQCMDTGSQVCNLAWSKHANELVSTH
GYSQNQILVWKYPALTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFSKTRS
TKESVSVLNLFTRIR
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atggatccagaatatgaacatcgcctcctccgccaaatcaacattcaaaatgacaactta
agtcctgttaaaatgacacagagtttatacagtcgaacacccactggatccccgttatcc
tcgcccagtaagcttggagacagatttattccgaccagagcaggggccaactggaatatt
aacttccacaggatcaatgaaaatgagaagtcaccgagtcagaacaaaaaaactaaagat
gcctctactgataatatcaaagcagatgggctggcctactctgctttgctgaagaatgag
ctgctgggagcaggaatagaaaagattcaggacccccagacagaagacaggcgtctacaa
ccatccacccctgagaagaggagtctcttcacttattcactcaataccaaaaggttgtct
ccagacgatggcaccaacatctccccctactccctatcacctgtcagcaacaaaagtcaa
aaattgttacgttcaccgagaaagccaactcggaagatctcaaagatcccctttaaagtg
cttgatgctccagagctgcaggacgacttttacctcaatttagtggattggtcgtctctc
aacgtgctcagtgtcgggctgggcacgtgtgtttatctttggagtgcctgtaccagccag
gtaacaaggctgtgtgatctatctgtggagggagactcagtcacgtcagtcggatggtct
gaaaggggtaacctggtggcagtggggactcacaaaggatatgttcagatctgggacgct
ggtgcagggaagaaactctttgccttggaaggacacacagctagagttggagcattggca
tggaatgcagaccagttgtcctcaggaagccgtgatcgtatgattcttcaaagagacgta
cggacgcctccactgcagtcagagagacgtctgcagggacacaggcaggaagtgtgcggc
ttaaagtggagcactgaccatcagctgctcgcttctggtggcaacgacaacaagctgctg
gtctggaaccactcctcgctgagcccagtgcagacatacatggatcacctggctgcagtt
aaagccatcgcctggtccccccaccagcatggcctgctggcctctggaggcggcactgct
gaccgctgtattcgattttggaacacattaacgtcacagccgctgcagtgtatggacacc
ggttcacaggtctgcaatctagcctggtccaagcatgctaacgagctggtgagcacccac
ggctactctcagaaccaaatcttggtgtggaaatatccagctctcactcaggtggccaag
ctcacaggacactcgtacagagtcctctacctggcgatgtccccggatggcgaggcaata
gtgacaggagccggagacgagaccctacgcttctggaatgtattcagcaaaacaaggtcg
acaaaggaatctgtatcagttttaaatctcttcaccaggatacggtaa
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