Lates calcarifer (barramundi perch): 108881446
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Entry
108881446 CDS
T04895
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108881446
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcf03021
]
108881446
03036 Chromosome and associated proteins [BR:
lcf03036
]
108881446
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108881446
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
108881446
PBAF complex
108881446
GBAF(ncBAF) complex
108881446
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
Motif
Other DBs
NCBI-GeneID:
108881446
NCBI-ProteinID:
XP_018528989
UniProt:
A0AAJ7PK61
LinkDB
All DBs
Position
LG12:21485055..21496534
Genome browser
AA seq
1050 aa
AA seq
DB search
MAVRKKDGGPNVKYFEASDTVSQFDNVRVWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGRHVSNPPLTKLPMKCFLDFKSGGALCHILAAAYKFKSDQGWRRFDFQNPSRMDRN
VEMFMTIEKSLVQNNCLTRPVIYLSPDIEPKLLGKLKDIIKRHQGSVTEDKASSSHVVVP
IPASLEEEEWVRPVMKRDKQVLLHWGYFPDSYDTWIPASEIEAAVEDPPSPEKPRKVHAK
WILDLDQYNEWMNEEDYEVGEGCPKRKRISAKTLTDEVTTPDERRDKKPGSAKKRKRSPS
PSPTPPPQESKKKNTKKGPTTPYTKSKRGQREEEQEDLSKDLDEASPVPASEEGNPAKTN
NTKKDSDSTPVKGGTDMDEQEDESMETTGKEEEEGSPSVKGEPVKGSDLHEDNVTEQTHH
IIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTS
TACRRNLAGDVCAIMRVHAFLEQWGLINYQVDSESRPTPMGPPPTSHFHVLADTPSSLVP
LQPKSSQTPATQQMMSFPDKVKDKPADLQNFGLRTDMYSKKTGSAKSKSAASSMREWTEQ
ETLLLLEGLEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSSSSLGPLAYQPI
PFSQAGNPVMSTVAFLASVVDPRVASAAAKSALEEFSRMKEEVPAALVEAHVRRVEEAAR
VSGRQDPLYGLEGSGIAGTGLEEGDRPEENADESKSDSQSSEEKREAKDSKDGAIEEEEK
QAENGKKEEERGREPEGEREADKTESEMGDGEKEKEGKEGTEEGQREGESEGERKAKVER
DVGEGNLATAAASALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELET
IMDREREALEYQRQQLLADRQSFHMEQLKYAEMRARQQHFQQIQHQQHSQAGGPHSNQAA
SAPPPQGLAGTQQAPSTPAPQPAASPAPPASSTPAPESQPPQGPHTSPPCPPSQAPATHS
SSSTTPVLHEPNAPLSGEALHPAAPVPPPQ
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaagacggcggcccgaatgtaaaatatttcgaagcgtctgatacc
gtttctcagtttgataatgtccgcgtctggctgggaaagaattacaaaaagtacatccag
gccgagccccccaccaacaagtctctgtccagcctggtggtccagctgctccagttccag
gaggaggtgttcggacgacatgtcagcaaccctccgctcaccaaactgccgatgaagtgt
ttcctggacttcaagtcagggggggctctgtgccacatcctggctgctgcctacaagttc
aagagtgaccaaggatggcgcaggtttgacttccagaatccgtcgaggatggaccgaaat
gtggagatgttcatgaccattgagaagtcccttgtgcagaacaactgcctgactcgaccc
gtcatctacctgagccctgacatagaaccaaaactgctcgggaaactgaaagacataatc
aaaagacatcagggctcagtgactgaggacaaggcctccagttcccatgttgtggttcct
attcctgccagtctggaggaagaggagtgggtgcgtcccgtgatgaagagagacaagcaa
gtgttgctccactggggatattttcctgacagttatgacacctggatcccagccagcgag
attgaggctgctgtggaggaccctcccagcccagaaaagcccaggaaggtccatgccaaa
tggattttagacctggaccagtacaatgagtggatgaacgaggaggactacgaagtggga
gagggctgccccaagaggaagaggatctcagccaagaccctgacagatgaggtgaccaca
cctgacgagcggagggacaagaaacccggcagtgccaagaagaggaagcgctcgccgtcg
ccctcccccacccctccacctcaggagagcaagaagaagaacaccaagaaagggccaacg
accccatacaccaagtctaaacggggccagagggaggaggagcaggaggatcttagtaag
gacttagatgaagcgtcacctgttccagcatctgaagagggaaacccagccaagacaaat
aacaccaagaaggactctgattcaactccagtcaagggaggaacagatatggatgagcaa
gaggatgagtccatggaaacaacaggcaaggaggaagaggaaggctctccgagtgtgaag
ggtgaaccggtgaaaggctcagaccttcacgaggacaatgtgacagagcaaacgcaccac
atcatcataccaagctacgctgcctggtttgactacaacagtgttcatgccattgagcgc
agagctctgccagagtttttcaacggaaagaacaaatccaaaacccctgagatttacctg
gcatacaggaacttcatgattgacacctaccgactgaaccctcaggagtacctgacctcc
accgcctgccgcaggaacctagcaggagatgtgtgtgcaatcatgagagtccatgccttc
ctagagcagtggggcctgatcaactaccaggtggactctgagagccggcccacacccatg
ggtcctccgcccacctctcacttccatgtcctggcagacactccatccagtctggtgccc
ctgcagcccaagtcgtcccagacccctgccacccagcagatgatgtcattcccagataaa
gtgaaggataaacctgcagatctgcaaaactttgggctgcggactgacatgtatagcaag
aaaactggctctgcgaagagcaagagtgctgcaagttccatgagggagtggaccgagcaa
gagacactactactacttgagggcttggagatgtacaaggatgactggaacaaagtgtca
gaacacgtgggaagccgcacacaggatgagtgtatcctgcacttcctgcggctgcccatt
gaagacccctacttggaggacagttcctcgtccctgggaccgctcgcctaccagccgata
cctttcagccaagcaggaaaccctgtcatgagcacagtggccttcctcgcctctgtagtc
gacccacgtgtggcctcagctgcagccaaatctgctctggaggagttttctcgtatgaag
gaggaggttcctgcagctctggttgaagctcacgtgcggcgggtggaggaggcagcgagg
gtcagcggccgccaggaccctttgtacggcctggagggtagtggcattgcaggaactgga
ctggaggagggagacagacctgaggaaaatgctgatgaaagcaagagtgacagccaatca
agtgaagagaagagagaggccaaggacagcaaagatggagcgatcgaggaggaggaaaag
caggcagagaatgggaagaaggaagaggagcggggaagagaacctgaaggagagagggag
gcggacaaaactgagtcagagatgggtgatggagagaaggagaaggagggaaaagaggga
acagaggaaggacagagagaaggagagagcgagggagagaggaaggccaaggtggagcga
gatgttggagaggggaacctggccactgctgctgcgtctgcactcgccgctgctgctgtc
aaagccaagcacctggctgcagtggaggagaggaagatcaaatctcttgtggctctgctg
gtggaaacccaaatgaagaagctggagattaaactgcgacactttgaagaactggaaacc
atcatggacagagagagggaggctttggagtaccagcgacagcaactgctggccgaccgt
cagtctttccacatggagcagttgaagtacgctgagatgagagctcgccagcagcatttc
cagcagattcagcaccagcagcacagccaggccgggggccctcattccaaccaggctgcc
tcggccccgccaccccagggcctggcagggacccagcaagctcccagcacaccagcaccg
cagccggccgccagccctgctcctccagcctcctccaccccggctcctgagtcccaacca
cctcagggccctcacacctcgcccccctgccccccgagccaggccccggcgacccactcc
agctccagcactacacctgttcttcatgagcccaacgctcctctctctggggaggcactc
caccccgcagctccagtccctcctccacagtga
DBGET
integrated database retrieval system
