Lates calcarifer (barramundi perch): 108881460
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Entry
108881460 CDS
T04895
Symbol
si:dkey-88e18.2
Name
(RefSeq) LOW QUALITY PROTEIN: interleukin-12 subunit beta
KO
K05425
interleukin 12B
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04060
Cytokine-cytokine receptor interaction
lcf04620
Toll-like receptor signaling pathway
lcf04622
RIG-I-like receptor signaling pathway
lcf04625
C-type lectin receptor signaling pathway
lcf05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04060 Cytokine-cytokine receptor interaction
108881460 (si:dkey-88e18.2)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
108881460 (si:dkey-88e18.2)
04622 RIG-I-like receptor signaling pathway
108881460 (si:dkey-88e18.2)
04625 C-type lectin receptor signaling pathway
108881460 (si:dkey-88e18.2)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
108881460 (si:dkey-88e18.2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04052 Cytokines and neuropeptides [BR:
lcf04052
]
108881460 (si:dkey-88e18.2)
00536 Glycosaminoglycan binding proteins [BR:
lcf00536
]
108881460 (si:dkey-88e18.2)
Cytokines and neuropeptides [BR:
lcf04052
]
Cytokines
Interleukins
108881460 (si:dkey-88e18.2)
Glycosaminoglycan binding proteins [BR:
lcf00536
]
Heparan sulfate / Heparin
Cytokines
108881460 (si:dkey-88e18.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IL12p40_C
Ig_3
ig
Ig_2
V-set_CD47
I-set
Motif
Other DBs
NCBI-GeneID:
108881460
NCBI-ProteinID:
XP_018529010
UniProt:
A0AAJ7LPS0
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All DBs
Position
LG13:4104906..4108914
Genome browser
AA seq
341 aa
AA seq
DB search
MKTLPLWIFGLLLISPTGAHGLNHFPENFVVVKKNDTVTLTCSSTQLTGDVTWKLENDEI
EVDDDFQLDGQNLKVSGVGTPSLGNYSCWSGEAMLSSTHLLLEAEAEEELDSFFHCWAKS
YDCNFSCVWNNSRYTAVRLGLGHDSIEGEKSYDWVSSNNQLPNGGFQFELSHSLSPYAEE
STMLKLTVEAMVYPLILRRTKRFYLRDIVNPDSPQIVKCQEVGEELNVTINPPSSWSTPH
SFFRLEHQIQYKLKDDGKVENSSSLLIPKGISKLRVRCRDSVVLSTWSQWTPWKNVTHXP
YLNPALSAPALSLFLHVYSFLSCPLIYRFLCVCACLCLTKR
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
atgaagactttacctctgtggatatttggacttctcctcatcagccccacaggagcacat
ggactcaaccactttccagaaaattttgttgtggtaaagaagaacgacacagtcacactg
acctgcagtagtacacagctcactggagatgtcacatggaagttggaaaatgacgagatt
gaggtcgacgatgatttccagctggacggtcaaaatctgaaggtgtcaggtgtaggtaca
ccctcgctaggaaactatagttgctggagtggagaagcgatgttatcatcaacccatctc
ttgctggaagctgaggctgaagaagaattagattctttcttccattgttgggccaagtct
tacgattgcaacttcagctgtgtctggaacaacagtagatacacagcagtgcgccttgga
ctgggccatgacagcattgaaggcgagaagtcatatgactgggtcagcagcaacaaccag
ctcccaaatgggggattccagtttgagctttcccactccctctcaccctatgctgaggaa
agcaccatgctcaaactcactgttgaggccatggtctaccccttgatcctcaggagaacc
aagagattttatctcagggacattgtcaaccctgatagtccccagattgtcaagtgtcag
gaggttggggaggaactgaatgtgaccattaatccaccgtccagctggtccactcctcac
agtttcttcaggctggagcaccagattcaatacaagcttaaagacgatggcaaggttgaa
aactcttcatcactcctgataccaaaggggatcagcaagctgagggttcgctgcagagac
tcggtggtgctctcaacctggagccagtggactccttggaaaaatgtaacccactgacct
tatctgaacccagcactgtctgctcccgctctttctttgtttttacatgtctacagtttc
ctgtcatgtcctctcatataccgttttctatgtgtatgtgcctgtctctgtttgaccaag
agataa
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