Lates calcarifer (barramundi perch): 108881539
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Entry
108881539 CDS
T04895
Name
(RefSeq) clathrin heavy chain 1 isoform X1
KO
K04646
clathrin heavy chain
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04142
Lysosome
lcf04144
Endocytosis
lcf05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
108881539
04142 Lysosome
108881539
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
108881539
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108881539
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lcf04147
]
108881539
Membrane trafficking [BR:
lcf04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
108881539
Exosome [BR:
lcf04147
]
Exosomal proteins
Proteins found in most exosomes
108881539
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_PEP5_VPS11
TPR_COPA_B
TPR_Vps41
Gp18_dom_I
LVIVD
HEAT_Nup120
Motif
Other DBs
NCBI-GeneID:
108881539
NCBI-ProteinID:
XP_018529133
UniProt:
A0A4W6C1W4
LinkDB
All DBs
Position
LG13:complement(4253146..4280142)
Genome browser
AA seq
1707 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGVNPANIGFSYLTMESDKFICIREKVGEQNQVVIVDMSDPTN
PIRRPISADSAIMNPASKVIALKAAKTLQIFNIEMKSKMKAHTMTEEVMFWKWISVNTVA
LVTDTAVYHWSMEGDSQPTKVFDRHASLAGCQIINYRTDEQQKWLLLIGISAQQNRVVGA
MQLYSVDRKVSQPIEGHAAAFGEFKVEGNAKPSTLFCFAVRSQAGGKLHIIEVGQPAAGN
QPFAKKAVDVFFPPEAQTDFPVAMQIGSKHGVIYLITKYGYIHLYDLESGVCIYMNRISA
ETIFVTAPHEATSGIIGVNKKGQVLSVCVEEENIVNYATNVLQNPDLALRMAVRSNLAGA
EELFARKFNTLFAQGSYSEAAKVAASAPKGILRTAETIRKFQSVPAQPGQASPLLQYFGI
LLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKASDPTLALSVYL
RANVPNKVIQCFAETGQFQKIVLYAKKVGYTPDWVFLLRNVMRVNPDQGLQFAQMLVQDE
EPLANINQIVDVFMEGSLIQQCTSFLLDALKNNRPAEGHLQTRLLEMNLIHAPQVADAIL
GNQMFTHYDRAHVAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLSV
EDSLECLRAMLSANIRQNLQLCVQVASKYHEQLGTQALVELFESFKSYEGLFYFLGSIVN
FSQEPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDR
FDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCAEDVIKNLIMVVRGQF
STDELVDEVEKRNRLKLLLPWLESRIHEGCEEPATHNALAKIYIDSNNTPERFLKENPFY
DSAVVGRYCEKRDPHLACVAYERGQCDLDLIKVCNENSLFKSEARYLVRRKDPELWANVL
EENNPYRRQLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSE
HRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFKKFDVNTS
AIQVLIEHIGNLDRAYEFAERCNEPAVWSQLARAQLHRDLVKEAIDSYIKAVDPSAYMEV
VNAASKNNNWEDLVKFLQMARKKARESYVETELIFALAKTNRLAELEEFVSGPNNAHIQQ
VGDRCYEEGMYEAAKLLYNNVSNFARLASTLVHLGEYQAAVDSARKANSTRTWKEVCFAC
VDGEEFRLAQICGLHIVIHADELEDLISYYQDRGYFEELIALLEAALGLERAHMGMFTEL
AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQSHLWAELVFLYDKYEEYDNAVITMMS
HPTDAWKEGLFKDIIAKVANVELYYKSLSFYLDYKPLLLNDLLTILSPRLDHSRAVTFFS
KVNQLKLVKPYLRSVQNHNNKSVNEALNNLLTEEEDYQGLRASIDAYDNFDTIGLAQRLE
KHELIEFRRIAAYLYKGNNRWRQSVELCKKDKLYKDAMLYAAESKDAELAETLLQWFLEE
GRKECFAACLFASYDLLHPDVVLELAWRHNIMDFAMPYFIQVMREYLTKVDEFAAKVTVD
KLEEAESQRKTEEEVTEPQPMVFGQQLMLTASPATVAPQPAYPGYGYPATAAAGYPAQAT
AAATAGYPAQAAAAAGYPAQATYGFNM
NT seq
5124 nt
NT seq
+upstream
nt +downstream
nt
atggctcagatactgccgatacgatttcaggaacatctgcagttgcagaacctgggcgtg
aacccagccaacattgggttcagctatctgaccatggagtcggacaagttcatctgcatc
agagagaaggtgggtgagcagaaccaggttgtgatcgtggacatgtctgaccccaccaac
ccaatcaggagaccaatctctgccgacagtgccatcatgaaccccgctagcaaggtcatc
gccctgaaagctgccaagacgctgcagatcttcaacattgagatgaagagcaagatgaag
gctcacaccatgactgaggaggtcatgttctggaagtggatatcagtaaacactgttgcc
ttggtgacggatacggccgtctatcactggagcatggagggggattcccaaccgaccaaa
gtatttgatcggcacgccagtctggcgggatgtcagatcataaactacagaactgacgaa
caacagaagtggctactgctgatagggatctctgcacagcaaaaccgtgtggttggggcg
atgcagctgtattctgtcgacaggaaagtgtcccagcccatcgagggccacgccgctgcc
ttcggggagttcaaagtggagggaaatgccaaaccctccaccctcttctgctttgctgtg
cgctcgcaggctgggggaaagttgcacatcattgaagtgggtcagccagctgcaggaaac
cagccatttgctaagaaagcagtggatgtgttcttccctccagaggcccagacagacttt
cctgtagctatgcagattggtagtaagcatggtgtaatatatttgatcaccaagtatggt
tacattcacctgtacgacctggagtctggagtgtgtatctacatgaaccgaatcagtgca
gagaccatctttgtaacagcccctcatgaagccacctcaggaattattggggtcaataag
aagggacaggtgttgtcagtgtgtgttgaggaggaaaacatcgtcaactatgccaccaat
gtcctgcagaaccctgatctagccttgaggatggctgtgaggtcaaatctcgctggggct
gaggagctttttgccagaaagttcaacactttgtttgcccagggaagctattccgaggct
gcaaaggttgctgcatcagcacccaagggtatcctgcggacggcagagaccatccgtaag
tttcagagtgtcccggcccagccaggtcaggcctctccgctgttgcagtactttggtatt
cttctggaccagggccagctaaacaagtttgagtctctggagctgtgcaggcccgtcctg
cagcagggccgcaagcagctactggagaagtggctgaaggaggacaagctggagtgctca
gaggagctgggagacctggtgaaggcctctgaccccacactcgctcttagtgtgtatctc
agagctaatgtccccaacaaggtcatccagtgcttcgctgagaccggacagtttcagaag
atagtgctgtatgctaaaaaggtgggctacaccccagactgggtgtttttactgagaaac
gtgatgcgcgtcaatccagaccagggactgcagtttgcccagatgctggtccaggacgag
gagccgctggccaacatcaaccagattgtagatgtatttatggagggcagtctgattcag
cagtgcacctccttcctgttggatgctttaaagaacaaccgcccagccgaaggacactta
cagacacgtctgcttgagatgaacctcatacatgccccccaggtagcagatgcgatcctg
gggaaccagatgttcacgcactatgaccgtgcccacgttgcccagctgtgtgagaaagca
ggtctgctgcagcgagcccttgaacactacactgacctgtatgatatcaaacgagctgtg
gtgcacacacatctgcttaaccctgagtggctggtgaacttcttcggttctttatcagta
gaagactccttggagtgtttaagggccatgctgtcggctaacatcagacagaacctgcag
ctttgtgtccaggtggcatctaagtatcacgagcagctggggactcaggcgttagtggag
ctctttgaatccttcaagagttatgagggactgttttacttcctggggtcgattgtgaat
ttcagccaggagcctgatgtccactttaagtacatccaggctgcctgtaagacgggccag
atcaaagaagtggagagaatctgtagggagagcaactgttacgacccagagagagtgaaa
aacttcctcaaggaggccaagctaacagaccagcttcctcttatcatagtgtgtgatcgc
tttgatttcgtccacgatctggtgctctacctctaccgcaacaatctacagaaatacata
gaaatctacgtacagaaggtgaaccccagtcgtttacctgtggtgataggcgggctgttg
gatgtagactgtgctgaagatgtcatcaagaacctgatcatggtggtcagggggcagttt
tccaccgatgagctggtggacgaggtagagaagagaaacaggttaaagcttcttttgcca
tggctggagtcccgtatccatgaaggctgcgaggagccagccactcacaatgccctggca
aagatctacatcgatagcaacaacacacccgagcgcttcctgaaggagaacccgttctac
gacagcgctgtggtgggaagatactgtgagaagagagacccccatctggcctgtgtggcc
tatgagagaggccagtgcgacctggaccttatcaaagtgtgcaatgagaactcgttattc
aagagtgaggctcgatatctggtacgacggaaagatccagagctttgggccaacgtgtta
gaagagaacaacccgtacaggagacaactcatcgaccaggtggtgcagacagcactgtca
gagacccaggatccagaggaggtgtccgtcacagtcaaggccttcatgactgcagatctg
cccaatgagctgattgaactgctggagaagattgtacttgataactctgtcttcagtgag
cacaggaacctccagaacctgctgattttgacggccatcaaagcagaccgcactcgtgtc
atggagtacattaacaggctagacaactacgacgctccggacattgctaatatcgccatc
agcaatgagctctttgaagaagcgtttgccattttcaagaagtttgatgtcaacacttca
gccatacaggtattgatagagcacatagggaacttagatcgtgcctatgagtttgctgag
cgctgcaatgagcctgcagtgtggagtcagctggccagagctcagctgcacagagacctg
gtcaaggaggctattgactcatatattaaagctgttgacccatcagcgtacatggaggtg
gttaatgcagccagcaagaacaataactgggaggacttggttaaattcctccagatggct
cgaaagaaagcgagagagtcgtacgtggagacggagctgatctttgctttagctaagacg
aaccgtctggctgagctggaggagtttgtcagcgggcccaacaatgctcacatacagcag
gtgggcgacagatgttatgaggagggtatgtacgaagcagccaagctcttgtacaacaat
gtgtctaactttgctcgccttgcatcgacactagtccatctgggagagtaccaggcagct
gtggacagcgccaggaaagccaacagcacacgaacatggaaagaggtgtgttttgcatgt
gtggatggcgaggagtttcggctggcacaaatctgtggccttcacatagtgatccacgct
gatgagctggaggacctgatcagctactatcaggaccgcgggtacttcgaggagctcatt
gctctgctggaggctgcgctgggtctggagcgggctcacatgggcatgttcactgagctc
gccatcctctactccaagttcaaacctcagaagatgagggagcacctggagctgttctgg
tccagagtcaacatcccaaaggttcttcgtgcagcagagcagtctcacttatgggcagag
ctggttttcctttacgataaatacgaggagtacgacaacgcagtcattacaatgatgtct
catccaacagatgcatggaaagaggggctgttcaaagacatcattgctaaggttgccaac
gtggagttgtactataaatctctttccttctacctggattacaaaccgctcctactgaac
gacctgctgactattctgtctccgcggttggaccacagccgagctgtcacctttttcagc
aaggtgaaccagctgaagttggtgaagccttacctgagatctgtccagaatcacaacaac
aagtccgtcaatgaagctctgaacaatctgttgacagaggaggaagactaccagggcctg
agagcatccattgatgcctatgataactttgataccattggcctggctcagaggttagag
aaacatgaactgattgagtttagacgtattgctgcttatctgtacaagggcaacaaccgc
tggagacagagtgtagagctctgcaagaaggacaaactctacaaggatgccatgctgtac
gctgcagagtctaaggatgctgagctggcagagactctgctccagtggttcctggaggag
ggcaggaaggagtgcttcgccgcctgcctgttcgcctcctacgacctgctgcaccctgat
gtggtgctggagctggcgtggaggcacaacatcatggactttgccatgccgtacttcatc
caggtcatgagagagtatctcacaaaggttgatgagtttgcagcgaaggtgacggtggac
aagctggaggaggcagaaagccaaaggaaaactgaggaggaggtgacagaacctcagccg
atggtgtttggccagcagctgatgttgactgcctctcctgccacagtggctcctcagcca
gcgtacccgggctacggctaccctgccaccgccgccgcaggttaccctgctcaggccacc
gctgccgccaccgcaggttaccccgctcaggctgccgcagctgcgggctaccctgctcag
gccacttacggcttcaacatgtag
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integrated database retrieval system
