Lates calcarifer (barramundi perch): 108881565
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Entry
108881565 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: zinc finger E-box-binding homeobox 1b
KO
K09299
zinc finger homeobox protein 1
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108881565
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain ZF
108881565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2
zf-H2C2_2
zf-C2H2_4
zf-C2H2_jaz
zf-Di19
zf-C2H2_15
Homeodomain
zf-met
zf-H2C2_5
zf-C2H2_6
Zn_SUZ12
Motif
Other DBs
NCBI-GeneID:
108881565
NCBI-ProteinID:
XP_018529156
UniProt:
A0AAJ7PKA5
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Position
LG24:3707382..3754739
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AA seq
1106 aa
AA seq
DB search
MADGPRCKRRKQANPRRNNVTNYNNVVEAGSDSDDEDKLHIVEEEGSLADGADCDSTLPD
DEHPREHCWDGGKEDCVSDGEDDVSTDALVEEMLQQGDTAVIYPEAPEDEPQRQGTPDAS
VHDENGTPDSFSQLLTCPYCARGYKRYSSLKEHIKYRHEKTEESFSCPECSYSFAYRAQL
ERHMTVHKAGRDQRHITQTGGNRKFKCTECGKAFKYKHHLKEHLRIHSGEKPYECSNCKK
RFSHSGSYSSHISSKKCISVISVNGRPRLGNAKTQTQGPSPVLSTPPSVLRTQIREKLEH
SKPLQEQLPLNQIKTEPVDYEYKPTVITSPAVTAMNGGVFNGGAAAPLQGTVQAVVLPTV
GLVSPISINLADLQNALKVAVDGNVIRQVLENNAKGQGQVNSGLTTGTLHPPQQQLISAI
SLPIVGQDGNAKIIINYSLDQGQLTAQNLKKEPEPVSPAQTTTDTFKSQKLPEDLTIRGT
RSNETKEKEEKTTKTCLLCDNCPGGLEALHALKHCKKDGLRLNGAGLDKSESAVAALLSE
GGLCSQPKNLLSLLKAYFALNAEPTKDELAKISDSVSLPIHVVKKWFDKMQEGQISLGAP
TPPSEEEDTCEANSVVSLVPGKDTSTMSPSVTQDSPTEATPAEINGAHSSPAPPSPLNLT
AGGPVPAQPPQSTEGPLDLSLPKPCREEAERVVAKASVYPSPSSCSTNEDEPLNLTCTKK
EASPLSVMSTSPVALYASQPSAKPLDIVATMQCLRALATNNKQTILIPQLAYTYTTTANS
PAGTEMHETIHLNGVKEEKQDTGSEGVSTVEEQNDSDSGPPRKKMKKTDSGMYACDLCDK
IFQKSSSLLRHKYEHTGKRPHECGICSKAFKHKHHLIEHMRLHSGEKPYQCDKCGKRFSH
SGSYSQHMNHRYSYCKKETQNQGEGRESPEEDAEAQAEMEALSRAQRQHLVPSQLDLDER
GSSTREDESEEEEEEEEEGVVDMNDIQVVQIGDEGGDEEEEEEEQGDRNEEGMERVMVEG
GGEEKTEIEMKSDEEEADTRQEEVLGSLQEEEDVKMEEDGAMDTEGGVTEEEKAEGEVTE
ESGGETNRNMVSEDENQTPQEKGDTD
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atggcggatggccccaggtgtaagcgcagaaagcaggcgaacccgaggaggaacaacgtg
actaactacaataatgtggtggaagccggctcagattcagatgatgaggacaagctgcac
attgtggaggaggaaggcagcctggcggatggggcagactgcgacagcaccctgccagac
gacgagcaccccagggagcactgctgggacggagggaaggaggattgtgtgtcagacggt
gaggatgatgtgagcacagatgccctggtggaagagatgctccagcaaggagacacagcc
gttatctacccagaggccccagaggacgagccacagcggcagggcacccctgatgccagc
gtccatgacgagaacggaactcccgattccttctctcagctgctcacctgcccgtactgc
gctcgtggctacaagcgttacagctctctgaaggagcacatcaagtaccggcacgagaag
actgaagagagcttcagctgtcccgagtgcagctacagctttgcataccgcgctcaactg
gagaggcatatgacagtccacaaggctggacgggatcagagacacatcacacagacaggc
ggcaatcgtaaattcaagtgcactgaatgtggcaaagcatttaaatacaagcaccatctg
aaggagcacctacgcatccacagcggagagaaaccctatgagtgctccaactgcaagaag
cggttctcccactcaggttcatacagctctcacatcagtagtaagaagtgcatcagcgtc
atctcagttaacggcagaccacgcttggggaacgccaaaacccagacccagggtccatca
ccagtgctgtccacaccaccatcagtcctccgcacccagattagggagaagctggagcac
agcaagcccctgcaggagcagctgcccctcaaccagatcaagactgagcctgtggactac
gagtacaagccgacggtgataacgtccccagctgtgactgccatgaatggtggggttttc
aatggaggcgctgcggctcctctgcagggcacagtgcaggccgtggtcctgcccactgtg
gggctggtgtcacccatcagcatcaacctggcagacctgcagaatgctctcaaagtggca
gtggacggtaatgtcattcgtcaggtgctggaaaacaatgccaaaggccaggggcaggtg
aactcggggttaaccactggaacgctccaccctccgcagcagcaactcatctcagccatc
agtctgcctattgtgggtcaggatggaaatgcaaaaatcattataaactacagtttagac
cagggccagctcacagcccaaaacctgaagaaagagcctgagccagtctcaccagctcag
accaccactgacaccttcaagtcccagaaactcccagaagatcttacaatcagaggcacc
aggtccaatgagactaaagaaaaagaggaaaagaccactaagacttgtctcctgtgtgat
aactgtcctggtgggctggaagcactccatgccctcaagcactgcaagaaggatggtctc
aggctaaatggagcaggcctggataagtctgagtctgctgttgctgccctgctgtcagaa
ggaggactctgcagccagcccaagaacctcttgtccctgctcaaggcctactttgcctta
aatgcagagcccaccaaggatgagctggccaagatctctgactcagtcagcctgccaatc
catgtggttaagaagtggtttgacaaaatgcaggagggtcagatatcactgggtgcccca
acacctccttcagaggaagaggacacctgtgaagccaacagtgtggtgtctctggtccca
gggaaggacacatccactatgagcccctctgtcacgcaggacagccctacggaagctacc
ccagcagagatcaatggtgctcacagctcgccggcccccccctcgccactaaacctgaca
gctggtggtccggtgccagcccagccaccccagagcactgagggacccctagacctgtcg
ctgccaaagccctgcagagaggaagcggagagagtggtggctaaagccagcgtttacccc
tccccctcctcttgctcaaccaatgaggatgaacccctaaacttaacttgcacaaagaaa
gaggcatcaccactctcagtcatgagcaccagccccgtcgcactgtacgccagccagcca
agtgccaaacccctcgacattgtggccacaatgcaatgcctaagggctctagccaccaac
aacaaacagactatcctgatcccccagctggcttacacctataccactacagcaaacagc
cctgcagggaccgagatgcatgaaaccatccacctcaacggagtgaaggaggagaaacag
gacacaggctcagagggcgtgtctactgtggaggagcagaatgactcagactcaggccct
ccgaggaagaagatgaagaagacggacagcggcatgtacgcctgtgacctgtgcgacaag
atcttccagaagagcagctcgctgctgagacacaaatacgaacacacagggaagcgacct
cacgagtgcggcatctgcagcaaggccttcaaacacaaacaccacttgatcgaacacatg
cggcttcactcgggggagaagccgtaccagtgtgacaagtgcggcaagcgcttctcccac
tcaggctcctactcccagcacatgaaccaccgctactcctactgcaagaaggagacgcag
aatcaaggagaaggccgggagagcccagaggaggacgccgaggcccaggctgagatggag
gccctgagccgggcacagaggcagcacctggtcccttcccagctggatttggatgagcga
ggaagcagcacaagggaggatgagagcgaggaagaggaggaggaggaggaggaaggagtg
gtggacatgaacgacatccaggtggtgcagataggggacgaagggggggatgaggaggaa
gaggaagaagagcaaggggacaggaatgaggaggggatggagagagtgatggtggaaggg
ggaggagaggagaaaacagagatagaaatgaaatcggacgaagaggaggccgacacaaga
caggaggaggtgctcgggagccttcaagaagaggaggatgtcaagatggaggaagatggg
gcgatggatacagagggaggggtgacggaagaggagaaagcagagggggaggtcacagag
gagagcggaggtgaaacaaacaggaacatggtttctgaagatgagaaccagacgccacag
gagaaaggagatactgactaa
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