Lates calcarifer (barramundi perch): 108881675
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Entry
108881675 CDS
T04895
Name
(RefSeq) short transient receptor potential channel 1
KO
K04964
transient receptor potential cation channel subfamily C member 1
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lcf04040
]
108881675
Ion channels [BR:
lcf04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
108881675
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GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank_4
MTR4-like_stalk
LHD_TRPY1
TALPID3
Motif
Other DBs
NCBI-GeneID:
108881675
NCBI-ProteinID:
XP_018529276
UniProt:
A0A4W6D440
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Position
LG24:13114001..13127944
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AA seq
796 aa
AA seq
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MHISVWPYSLSVVMAALYQGTDASSPDKFLALKDVREVKEETTLDEKLFLLACEKGDYYM
VKKLLEENRHGELNINCVDVLGRDAVTITIENENLDILQLLLEHGCQATDALLVAIDSEV
VGAVDILLNHRPRRSSKPSIAKLMQRIQNPEYSTTMDVAPVILAAHRNNYEILTMLLKQD
ISLPRPHAVGCECTLCNAKNKKDSLRHSRFRLDIYRCLASPSLIMLTEEDPILRAFELSA
DLKELSLVEVEFRNDYEELAKQCKMFAKDLLAQARNSRELEVILNHTSSEDHVDKRGLLE
ERMNLSRLKLAIKYNQKEFVAQSNCQQFLNTVWFGETASYRRKHTCLKMATVLSVAMLWP
LLSVCYLLVPRSRVGQIIHTPFVKFIIHSASYFTFLLLLNLYSLVYNEGKKNTMGPALEM
IDYLLILWIIGMVWSDVKRLWYEGLEDFLEESRNQLSFVMNSLYLATFALKIVAHSKFKN
VGDTERKNWDAYHPILVAEGLFAFANVLSYLRLFFMYTTSSILGPLQISMGQMLQEFGKF
LGLFLLVLFSFTIGLTQLYGKDKKDRDKNPANDCEGIFCQQQSNDAFHTFMGTCYALFWY
IFSLAHIALFVTRISYTEELRSFVGAMIIGTYNIVVVIVLTKLLVAMLHKSFRQIANHED
KEWKFARAKLWLSYFDDKCTLPPPFNILPSPKTVCYLVTSMSKWICSHTSKGKVKRQNSL
KEWKNLKQKRDENYQKIMCCLVHRYLTSTRQKMQSTDQATVENLNDLRQDLSKFRNEMRD
LLGFRTSKYAMFYPRS
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgcacatcagtgtttggccgtactcgctctccgtcgtaatggcagctctgtaccagggc
acggacgcttcctctccggataaatttctggccttgaaagacgtgagagaggtgaaggag
gaaacgacactggatgagaagcttttcttgctggcatgcgagaaaggcgactactacatg
gtgaagaaactcctcgaggagaaccgacacggcgagctcaacatcaactgcgtggatgtg
ctgggccgggacgctgtgaccatcactattgagaatgagaatctagacatcctgcagctt
cttctggagcacggctgccaggcgacagatgccttgttggtggccatagattcggaggtg
gtgggagctgtggacatcctcctcaaccacaggcccaggcgatcttctaagccctccatt
gctaaactgatgcagcggattcagaatccagagtattccaccaccatggatgtggctcca
gtcatcctggcagcccacaggaacaactacgagatcctgactatgctgctgaaacaggac
atctcgcttccccggccccatgctgttggctgcgagtgcacgctctgcaatgctaaaaac
aagaaggacagcttgcgacattccaggtttcgcctggacatctaccgctgtctggccagc
ccctctctgatcatgttgactgaggaagaccccatactcagagcctttgagctgagtgca
gacctgaaagagctcagtctggttgaggtggagttcaggaatgattatgaggagctggcg
aagcagtgcaagatgtttgccaaagacctgctggctcaggcccgaaactctcgagagctc
gaagttattctcaatcacacgtccagcgaagatcatgttgacaagagaggcttgctggaa
gagcgcatgaatctaagtcgacttaaactcgccattaagtacaaccaaaaagagtttgtg
gctcagtccaactgtcagcagttcctcaacactgtctggtttggagagacggccagctac
cggcgcaaacacacctgtctgaagatggccacagtgctgagtgtggcgatgctttggccg
ctgctatctgtctgctaccttctggtgccccgatcccgtgtgggccaaatcatccacacc
ccattcgtcaagttcatcattcacagcgcctcctactttacattcctgctgctgctcaac
ctctactctctggtctataatgaaggcaagaaaaacaccatgggccctgcgctggagatg
atcgattacttgctcatcctttggatcataggaatggtgtggtcagacgtgaagcgcctg
tggtacgaagggctggaagactttctggaagaatctaggaaccagctgagctttgtgatg
aattcactttacctagccacctttgccctcaagattgttgctcatagcaagttcaagaat
gtgggggacacagagaggaagaactgggacgcctaccatcccatcctggtggctgagggc
ctgtttgcctttgccaatgttctcagttacctgcgactcttcttcatgtacaccaccagc
tccatactggggccgctccagatctccatgggtcagatgctgcaggagtttggaaagttt
ttgggcctgttcctgctggtgttattctccttcaccattggactcacccagctttatgga
aaggacaagaaagaccgagacaagaatccagccaatgattgcgagggcatcttctgccag
caacagagcaatgatgcattccacacgtttatggggacctgctatgccctgttctggtac
atcttctccctggcacacattgcgctcttcgtcacccgcatcagctacacggaggagcta
cgctcttttgtgggcgccatgatcataggcacctacaatattgtggtggttattgtcctg
accaagttgctggtggcaatgctccataaaagcttcagacagattgctaatcacgaagat
aaggagtggaagtttgctcgggcaaaactgtggcttagttactttgatgacaagtgtacc
ctgccaccaccgttcaacatcctcccctccccaaagactgtgtgctacttggtgacaagc
atgagcaagtggatctgttcacatacctcgaagggcaaggtgaagagacagaacagcctt
aaggagtggaagaacctgaaacagaagcgtgatgagaactaccagaagatcatgtgttgt
ctggttcaccgttacttgacctccacgcggcagaagatgcaaagcacggaccaggccacg
gtggaaaatctgaacgatctgcgccaagacctctccaagtttcgcaacgagatgagggac
ctgctggggttccgaacgtccaaatacgccatgttctacccaaggagctaa
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