Lates calcarifer (barramundi perch): 108881811
Help
Entry
108881811 CDS
T04895
Symbol
trpa1b
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1b
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lcf04040
]
108881811 (trpa1b)
Ion channels [BR:
lcf04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
108881811 (trpa1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
Ank_3
Ank_5
Ion_trans
Ank_KRIT1
Motif
Other DBs
NCBI-GeneID:
108881811
NCBI-ProteinID:
XP_018529499
UniProt:
A0AAJ7LSG0
LinkDB
All DBs
Position
LG24:10741188..10758924
Genome browser
AA seq
1118 aa
AA seq
DB search
MNFSREVARQTSCYTYVIEDEDPALASLNVFELTEKGDLALLENLVRKSPEVLSERDECG
AGPLHHAAAGGHVTLIQYITTVIDSQELNSCDEQGNVPLHWAVERNKAESCRALMDLGAN
PNILNTALLSPLHLAVNRGHNDLVELLLSYSATDCDLEGDLGNSPVILACSINNCEALSI
LLKHGARFCKQNKLGHFPIHAAAFAGANKAMEVILKTGEELGHSAVNHINYIDKSRSSPL
HLAVRGGNIEAIRLCVATGAKVDQQQNDKSTPLHLACTQGATEVVKLMLSSFEQVEDIIN
LTDGACQTPLHRATIFDHAELAEYLISLGADLNSIDCKGNSPLLLATSCGAWRTVSLLLS
KGANINVKDRCGCNFLHLAILQPKGLKNLPQEVLQDNNVKALLSCEDNEGCTPLHYACRL
GIHDSVKNMLGLSGQVGLACKSKDKKSALHFAAQYGRINTCHRLLESITDSRLLNEGDER
GLTPLHLASRGGHTKVVQLLLRKGALFHSDYRGWSCLHHAASEGYTQTMDILLSANPKLL
DKTDEDGNTALHIAAREGHVAAVKLILARGADLVLNKNDTSFLHEALQNGKKDVVNAIID
SDRCVEALGLFIPDSGQRCPILDMIEFLPETYKHLLDRCVRESDHDLNSPDYHIEYNFKW
LQAPLTAKKSANNTMRYQPLAALNAMVQYNRIELLNHPVCKKYLAMKWVAYGSKAHVLNM
FLYLLGLLPLTHLIMELRPTMNNTDTGEHTITMVPISFREQSLSLSFCMVMVLVMNVYCI
AKEMVQISQQRWNYFKDYSNQIDWFSAITSLLFIIPIMLNVDGSLHWQAGAIAVLNSWVG
FLLYLQRFEGVGIYVVMFGEIMRTLVRIVMLFIYLMLAFGLAFHALMLNQDEFDSVPLSV
MQTFVMMVGELNYQNNFLDAYLKNKLPFGLLTYLIFVNFVLLMPILLVNLMIGLAVGDIA
EVQRNAALKRIAMQIDLHTALEDKLPYWFMKRVDKPSITVYPNRKCSTQYIRNLFTGDDE
INEVWSRVQAKSQSCTLVENELIKQKSRMKEMSNMLEKQHGLLKLIIQKMEITSEADEYD
GPVNLKGINWPRPSQIKPRGHSASRWVPLMKAIESKRK
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcagcagggaggtggcccgacagaccagctgttatacatacgtgatagaagat
gaagatccagccctggcaagcctaaatgtattcgagttgaccgagaagggtgacctggct
ctcctggagaacctggtgaggaaaagcccagaggtcctgagtgagagagatgaatgtgga
gctggtccccttcatcacgccgccgcaggggggcacgtcaccctcatccaatacatcacc
actgtcatagactcacaggagctgaacagctgtgatgagcagggcaacgtgcccctgcac
tgggcagtagagaggaacaaggcggagagctgcagggctcttatggacctgggggcaaac
cccaacatcctcaacacagccctcctgtcccctctgcacctggctgtcaaccgtggacac
aacgacctggtggagctgctgctgtcttacagtgccacagactgtgatctggagggagac
cttgggaacagcccagtgatactggcatgctctatcaataactgtgaggctctcagcata
ttgttgaagcatggagcacggttctgcaaacagaacaagctcggccatttccccatccac
gcagctgccttcgcaggtgccaacaaagccatggaagtgatcctgaagaccggagaggag
ttaggccactcggctgtaaaccacatcaattatatagataagtccaggagcagtcccctc
catctggctgtccgtggcgggaatatcgaagccatccgcctctgcgttgccactggggcc
aaagttgaccagcaacagaatgacaagtccacaccgctccatttggcctgcacgcagggg
gctacggaggtagtcaaactgatgctctcctcctttgaacaagtggaagacatcatcaac
ctaactgatggggcatgtcagacccctctgcacagggctaccatatttgaccatgcagag
ctggcagagtacctaatttctttgggtgcagaccttaacagcattgattgcaaaggaaac
tcacccttgctgctggctacgagctgtggagcatggagaactgtgtctctgctactgtca
aagggggcaaatataaacgtgaaagacagatgcggttgtaacttcctccacctggccatt
ctgcagcccaagggtctgaagaatctcccacaggaagtactgcaggataacaatgtgaag
gcgctgctgagctgcgaggataatgagggctgcaccccactccactatgcttgcaggctg
ggtatccatgactcagtgaagaacatgctgggcctctcggggcaagtcggcctcgcatgc
aagtccaaggacaagaagtctgccttgcactttgctgctcagtatgggcgaatcaacaca
tgtcaccgattacttgagagcatcacagactctcgtttgctaaacgaaggcgatgagcga
ggccttacgccacttcatttggcttcaagaggagggcacaccaaggtggtacagctgctg
ctgcgcaaaggagctctctttcacagtgattataggggctggagttgtctgcaccatgca
gcatctgaaggctacacacaaactatggacattctcctgtcagccaatccaaagttactg
gataaaacagatgaggatgggaacactgcactccacatcgcagcaagagagggacatgtg
gctgcagtcaagctcattctggctcggggggcagatctcgtcttaaataagaatgacaca
tcgttcctccatgaagctctgcaaaacgggaaaaaagatgtggtcaatgctataattgat
agtgacagatgtgttgaggccttgggactgttcatacctgactcaggccagcgatgtcca
atactcgacatgattgagtttctgcctgagacctacaagcacctattggaccgttgtgtt
agggaatctgatcatgacctcaacagtcctgactatcatattgaatacaatttcaaatgg
ctccaagctcccctcacagcaaagaagtcagctaacaacaccatgaggtatcagccactt
gctgcactgaatgcgatggtgcagtacaaccgcattgagctcctcaaccaccctgtctgc
aaaaagtatctggcaatgaagtgggttgcatatgggagcaaggctcatgtgctcaacatg
tttttgtacctgttaggcctgctgcccctgactcacctgataatggaactcaggcccacg
atgaacaacactgacacaggcgagcacactatcaccatggtgcccatatctttcagagag
caaagtctgtccttgtccttctgcatggtgatggttttggtcatgaacgtctattgcata
gcgaaggagatggtgcagatatcacaacagcgctggaattacttcaaggattattccaac
caaattgactggttttcagccatcacctctctcctattcatcatccctatcatgctcaat
gtagacggttctttacattggcaagcaggggcaatagcagttttaaactcctgggttgga
tttctcctctatctccagaggtttgagggtgttggcatctatgttgtgatgtttggagag
atcatgaggaccctggtccgtattgtaatgctgtttatttacctgatgttagcgttcgga
ttggcgttccatgctttgatgctcaaccaggatgagtttgacagtgtgccactctcagta
atgcagacctttgtgatgatggttggggaactgaactaccagaataacttcctggatgct
tatctgaaaaacaagcttccttttggcctcctgacttacctcatttttgtgaactttgtg
ctgctcatgccaatactgctggtgaacctgatgattggtttagcagttggagacattgct
gaagtacaaagaaatgctgccctaaaaagaatagccatgcagattgacctccacaccgct
ctggaagataagctgccttactggtttatgaaacgagtcgacaagccctccataactgtc
taccccaatcgcaagtgttccacgcagtatataaggaatttattcacaggcgatgatgaa
ataaatgaagtctggagtcgtgtgcaggccaaatcacagagctgcactctggtagagaac
gaactaatcaagcagaagagcaggatgaaagaaatgtcaaacatgctggagaagcagcac
ggtcttctgaagctcatcatccagaagatggaaatcacctccgaggccgacgagtacgac
ggccccgtgaacctcaaaggcattaattggccgcgcccgagtcagattaagccaagagga
cacagtgcgtctcggtgggtcccgctgatgaaggccatcgagtccaaacgcaaatga
DBGET
integrated database retrieval system
