Lates calcarifer (barramundi perch): 108882021
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Entry
108882021 CDS
T04895
Symbol
fxr2
Name
(RefSeq) fragile X mental retardation syndrome-related protein 2 isoform X1
KO
K15516
fragile X mental retardation protein
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108882021 (fxr2)
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108882021 (fxr2)
Factors involved in mRNA localization
Other mRNA localization factors
108882021 (fxr2)
mRNA cycle factors
Stress granule specific factors
108882021 (fxr2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FXMRP1_C_core
KH_9
Tudor_FRX1
FXR_C1
KH_1
Agenet
Tudor_2
DUF150_C
Motif
Other DBs
NCBI-GeneID:
108882021
NCBI-ProteinID:
XP_018529752
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Position
LG14:4198701..4214789
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AA seq
681 aa
AA seq
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MDGLAVEVRGSNGAFYKGYIKDVHEDSLTIVFENNWQPERQLPFSDVRLPPPADYHKEIG
EGEEVEVYSRANEQEPCGWWLARVRMMKGEQKKLGKFYVIEYAACDATYNEIVTSERIRP
LNPNSPSSRNSFHKVPIPVPEDLRDICANDNIHKDFRKAIGANCIFYSAQTHELIVLSTN
ETTVKRATLLSDMHFRSIRTKLMLMSRNEEATKHLETSKQLASAYQEEVRVREDLMGLAI
GSHGANIQQARKVPGVTAIELEEESCTFRIYGETPEAVKQAREYLEFKEDYFQVPRNLVG
KVIGKNGKVIQEIVDKSGVVRVRIEGDNDKKLPREEVGRQGAGRDDTASSKEGMVPFVFV
GTKENISNAQALLEYHVSYLQEVEQLRLERLQIDEQLRQIGVGYRAPPSRTGGPGVDREK
GYLTDESSNSLHTSRTYGGRGRGRRASNSQYSGYGTNSELSNASESEDVIERDQRPRGLG
GEERGSRRGGRGRGSNSGRGRGGPGSKPSNSISSVLRDPDSNPYSLLEGEGELADADISE
GMGGDRRRRSRRRRNDQEPSVMDAAAESDSQAGPSENGLDEEARPQRRNRSRRRRNRGNR
PEGGSASRDRQPGESVTVADYISRADSQSRQNLPQKENHAGSEPKENGTSAKKDERTPSK
RSPSKGMTSPSETLTLVNGVS
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggacggactggccgtggaagttcgcggctcgaacggggccttctacaagggttacatc
aaagatgtccacgaagactcactcacaattgtatttgaaaataactggcagccagagaga
cagttgcccttcagcgacgtgcggttgcctcctccagccgactaccacaaggaaattggt
gaaggagaggaggtggaggtgtactccagggccaacgaacaggagccatgtggctggtgg
ctggcgcgggtcagaatgatgaagggagagcagaagaaactgggaaagttctacgtgatt
gaatacgcagcgtgcgacgccacatacaacgagattgtcacatcagagcgcatcaggccc
ctcaaccccaacagcccctcctcccggaactccttccacaaagtccccatccctgtccca
gaagacctgagggacatctgtgcaaatgacaacattcacaaagacttcaggaaagctatc
ggagccaactgcatcttctacagtgcccaaacacacgaactcattgtgctgtcaacaaat
gaaaccacagtaaagcgtgccactcttctgagtgacatgcattttcgcagcattcgcact
aagctcatgctaatgtcccgcaacgaagaagccaccaaacatttggagacaagtaagcag
ttagcgtcagcataccaggaggaggttagggtcagggaggacctgatgggcctcgccatt
ggctcccacggtgccaacatccagcaggcaaggaaggtgcccggggtcacagctatcgag
ctggaggaggaaagctgcacattcaggatctacggagagaccccagaggcagtgaagcag
gctagagagtatcttgagttcaaagaagactactttcaggtacccaggaaccttgtaggc
aaagtcatcggcaagaatggcaaagtcatccaggagattgtggacaagtcgggtgtggtc
cgtgtcaggattgaaggagacaacgacaaaaagcttccccgggaggaggtaggcaggcag
ggggctggcagggacgacactgccagcagcaaagagggcatggttccctttgtgtttgtg
ggaactaaagagaacatcagcaatgctcaggctctgctggaataccatgtgtcctatctc
caggaggtggagcagctgcgtctagagcgtctccagattgacgaacagctccgtcagatc
ggggtgggctatcgtgcacctcccagtcgaactgggggcccaggtgttgaccgggagaaa
ggctacctgacagatgagagcagcaactcactccacacctctcgcacctatggaggccgc
ggcagaggacgcagggcctccaacagccagtactctggatatggcacaaactctgaactg
tccaacgcctctgagtcggaggatgtcattgagcgagaccagcggccccgtggcttaggc
ggagaggagagaggctcccgacggggcggcaggggcagaggctccaactcaggacgaggc
cgtggagggccagggtccaagccttccaactcaatcagctcagtgctgagggaccccgac
agtaacccatactccctgctggagggtgagggagagcttgccgacgcagacatcagtgag
ggcatgggaggagaccgccgcagacgttcccgccgccgccgcaacgaccaggaacccagc
gtaatggacgcagctgcagagtcggacagccaggccggccccagcgagaacggactggat
gaagaggcccgacctcagcgccgcaaccgaagccgccgccgccgtaaccgtggcaaccgc
ccagagggaggttcagccagccgtgacagacagccaggtgaaagtgtgactgttgctgac
tacatatcccgtgctgactcccaaagcagacagaacttgccccagaaggaaaaccacgct
ggctctgagcccaaggaaaacgggaccagcgccaaaaaggatgagcgaacaccctccaaa
cgttcccccagcaaaggcatgacctcgcccagcgagactctgaccttggtcaacggggtc
tcgtaa
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