Lates calcarifer (barramundi perch): 108882134
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Entry
108882134 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: dmX-like protein 1
KO
K24155
rabconnectin-3a
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
108882134
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108882134
Membrane trafficking [BR:
lcf04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
108882134
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
108882134
RAVE complex
108882134
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
Beta-prop_THOC3
WD40
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_WDR5
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR3_2nd
Beta-prop_IFT140_1st
WDR55
Beta-prop_WDR36-Utp21_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WD40_Gbeta
Beta-prop_HPS5
EIF3I
Beta-prop_EML
Beta-prop_CAF1B_HIR1
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_DCAF12
Beta-prop_VPS8
Motif
Other DBs
NCBI-GeneID:
108882134
NCBI-ProteinID:
XP_018529969
UniProt:
A0AAJ7LR18
LinkDB
All DBs
Position
LG13:5368332..5420584
Genome browser
AA seq
3095 aa
AA seq
DB search
MNLHQVLTGAVNPGDNCFSVGSVNNVPFTAYASGCDVVILGSDFERLQIIPGAKHGNIQV
GCVDCSLQGGQIAASYGSIVCVFEPVQHPDQKDTSLTKLNCQWQKTGQFVLQSMVRNLAW
HPTGSTLLTGSSSLQLWSNVDGVKDEAEEGGEQAEMTMRDSHSAWRCIWQSKTASPVSLM
KFSPDGEFFATAGQDDCLVKVWYSTSKWKSGVSRLFTPPEPSVSVQGELAFSFVYLAHPR
SVTGFSWRKTSMYMPRGAVCNVLLTCCKDSVCRLWAETLLPGDSLLSGLHNNHAPGQHSD
ALRCAGSTRKHTCNGKTQGKTAQENFQESWHSSLNRDVPQPSLTSCLPHHQSRHYNHKKS
SSNMPHANALCHFHIAASINPATDIPLLPSISSLSAVDDEEPGGPFTVHWLNNKELHFTL
AMEVFLQQLRGSLEQQSECSHEEPEDEENFDEEDNSSRPSDPQGPETVELSLAAVEHQVD
VLLEEWNKGADMLFSIHPMDGSLLVWHVDWLDEYQPGMFRQAQVSFVSRIPVAFPTGDAI
SLSHSVVMYACNKNVDLAIQHGRQRPPGSTLPQTKSALISYGGQGKAAPSSSLRLSIFTP
NVLMISKHADGSLNQWAVSFAEDSAFSTVLSVSHKSRYCGHRFHLNDLACHSLLPLLLTT
SHHNALRTPEVDSILAPPEACSSGFSHPTSLPRRSRPSRVSLGVVSQDPNAIYSELILWR
VDPVGPLSLSGGVSELARINSLHASAFANVAWLPTLIPSSCLGVYCNSPSACFVASDGHS
LRLYQAVIEAKKLLSELSNPEISKYVGEVFNIISQQSTAKPGCIIELDAITDFQGKETQL
LHVFEEDLILGREKTESTQDTPDSPHTASGEPTFSARFFLVVVELTPTGRSLLHMWHLHL
AARPITMDEATTEKDATTASPINSPQFNFDTFSSPAAQKSKTCTSNLQSACRLSLTTHRL
YSQEMALPEGVEAISVTPSAGHLSASCSLPAGRVPYLLATSCSDGKVRFWRCNVVATESS
SMDSLLYHWEEWQLLVEERLPNSSAVSVPGRPIEVSCCHTGRIAVAYRQTPNTPLNSTPH
PNSHGLLTPPPTLASSPYNTHLTPTLTVQRSPNLTPSHNLANTKEPLVHISIFQCESTGG
SQWILEQTIVLDSTDPTANCGISNSTTGGASVPSKVDFSLPNENCLGFTSKSLVHLDWVS
QEDGSHVLTVGIGTKIYMYGRLSGKPPELGLSSDASRDQSLSRLVLLRSVDLVSSVEGSL
PIPVSLSWVRDGILVVGMDCEMHVYSQWQPPTPPKPNVAIAQDIDISSSVSSIISAVRQS
QEEGLSPGAPMSLLAPPKKALTRSMMSLAQKLSGKRTAYDLPVEMEDSGLFEAAHQLFPT
LPQYHPVQLLELMDLGKVHRAKAILSHLVKCIAGEIVALKDSTTNPEKRVRSRTISAGGS
TARDPKMFSKVENSTPDYTEISSIPPLPLYSLMAADEDTSPKPDKVGSVSGDSGHGSSHT
DAYDELFHTPSIVDLDPLDSDQEEPGNKVIDLSQYSPTYFGPEHAQVLSSHLLHSSLPGL
TRMEQMSLMALADTIATTSTDLKDSQGKSKGGETLDECGLKFLLAVRLHTFLSTSLPPAH
RAQLLRQGLSTCHYAWAFHSEAEEELLNMLPALQKGEPTWPELRSMGVGWWLRSTNKLRR
CIEKVAKASFQRSNDPLDAAIFYLALKKKAVVWGLYRSQKNAKMTDFFRNNFSEDRWRKA
ALKNAFSLLGKQRFQHSAAFFLLAGSLKDAVEVCLEKMQDLQLALVISRLYESEFETSST
YKKILQRHVLGQDKQIPAHQDPFLRSMAHWVLEDYSRALDTLLEQPANSTSSGSTESKRD
AGSLSVSTCNPEVFNFYTYLRTHPLLLRRHFGSSDKAKVGLTAEGRRADSISLEERRLFF
TAAYAHLQAGCPMLALEVLSKMPKVRKHSKLLNQEDTGITAEQLSVGSKNGQASDPDWSQ
PALNGYESDGNSLSNSKSDSVLSFDWSQPSLTLPDESLELKWDSDKDDDEDEDEDQEETK
NGKSSRTADSSSVFQDTQDAMSPLMGTVTGEDSEDSSDFIAPSDDILAAQLKFTACLKIM
TNELRTLSTGYELDGGKLRYQLYQWLEREVVALQHCCSYKPCLPDLSVQSDVPVSGLVEE
EQPGSPRGDSQRSRRHWLQSNQPLLRMFLSYCSLHGSHGGGLASVRMELILLLQESHQDE
SIQPVVTLSSQPTSIPLLMACTSNVKTVVANPIVYLTNLTHDILQTINALDSPPHPDVVN
NEIYVMHTLAASLSACIYQCLCDGHTYSSSTVNHFTGIVYQSVLLSQKQPVRTVSMDESV
QPNTSPAQWPGIASLIRLLSSAGEESQPGLAVLLCEILTAVFLSLFVHGMATHSSNELFR
IVAHPLNSKLWVTVFGGGARTPVIEKPNSPARTPPPASPSGSDRKSRRFKLLSSRSGSKE
ESGIEREGPISPKHVPVVEQEATSIFKERFVPPELSIWDYFIAKPFLPPSENRIEYDSEE
SQGSQDEDEDDDEFEDVFDPNSPQREHSNHNSYSWCLMRLAMVQLVLVKLKSFYPMAGYD
LLDLPVGSPLCHAVLKTLQRWEQVLQKRLEIFGGPPSKYISTHLQDETSTPGPALLRHKV
LFEPSNTPFRTNHHSALPVKRLWQFLVKQEEVQETFIRNIFTKKRDPNETESDLGCPGGK
ARIIHKESDIITAFAINKANRNCLVMASTHDIQELDVSSILATQILTWIDDDEAEAKGVG
GDDFLVVHARDDFAALHGTTPYTHSSPGTPINMPWLGGLQTGRGASVMIKRNINNVRRMT
SHPTLPYYLTGAQDGSVRMFEWGHSQQIICFRSPGNSRVTRIRFNHQGNKFGIVDADGGL
SLWQTNTSGNAPKPFLTLQCHNKTAHDFVFVGSSSLIATAGLSTDNRNVCLWDTLVTPAN
SLVHAFCCHESGATVLAMAPRQQLLITGGRKGWISVLELPHRHQRQSFQAHDSPVKALAV
DPIEDCFISGSAEGNIKVWSLATQCLLYAFPNEHARQSLFRNLGTGVMQIEVGPTNHIFS
CGADGTMKMRILPNRYSVVNNNNHSNLKNDVKFII
NT seq
9288 nt
NT seq
+upstream
nt +downstream
nt
atgaatctccatcaggtcctcacaggggctgtcaaccctggagacaattgtttctctgta
gggagcgtcaacaatgtgccattcacggcctatgcatcaggttgcgacgtggtgattttg
ggcagtgactttgagcgacttcagatcatcccaggggccaaacatggcaacatccaagtc
ggctgtgtcgactgctcactgcagggtggacaaattgcagcttcctatggaagcattgtg
tgtgtctttgagcctgttcagcacccagatcaaaaagatacatcgctgactaagttgaac
tgccagtggcagaagactggacagtttgtattacagtccatggtacgcaacctggcctgg
caccccacaggcagcactctcttaacaggctctagtagccttcagttgtggtctaatgtt
gatggcgtaaaagatgaagctgaagaagggggagagcaggcagaaatgaccatgagagac
tctcattctgcctggaggtgcatctggcagagcaagacggcttcaccagtcagtttaatg
aagttctcacctgatggggaattctttgctactgctgggcaggatgactgcctcgtaaag
gtctggtacagtaccagtaagtggaagtcaggtgtttccagactcttcacacctccagaa
cccagtgtcagtgtccagggagagctggccttctcctttgtctacctggcccatccccgt
tctgttactggcttctcatggaggaagaccagcatgtacatgccacgaggtgccgtgtgt
aatgttctgctcacctgctgtaaggacagcgtgtgtcggctctgggcagagacactgttg
ccgggtgacagcctcctgtctggtctccataacaaccacgcccctggccaacacagcgac
gcactcagatgtgctggttctacaaggaaacacacctgcaatgggaagacgcaaggaaaa
acagcacaggaaaattttcaagaatcatggcactcctccctcaatcgggatgtgccccag
ccttccctgactagttgcctgcctcaccatcagagtcgacactacaaccacaagaagagc
agcagcaacatgccccatgccaacgctctctgccacttccacattgctgccagcatcaac
ccagccacagacattcctctactgccctccatctcctctctgagtgctgtggatgatgag
gaacctggaggtccttttactgtccactggctcaacaacaaagagcttcatttcacttta
gctatggaagtcttcctgcagcagctccgaggcagcctggagcaacagagtgaatgctcc
catgaagagcctgaagatgaggagaactttgatgaggaggataatagtagcaggccaagt
gacccccaaggacccgagactgtggagctttctctggcagcagtggagcaccaggtggac
gtgctgttagaggagtggaataaaggggcagacatgttgttcagtattcatcccatggac
ggctctctgttagtctggcatgtggactggttagatgaataccagccaggaatgttcaga
caagctcaggtgtcgtttgtgtcccggattcctgtagcattccctacaggtgatgcaatc
tccctgagccacagtgttgttatgtatgcctgcaacaagaatgtggatctggctatccaa
catggcagacagcgaccgcctgggagcacactgcctcaaactaaatctgctctaataagc
tatggaggtcaaggaaaagctgcacccagcagtagtctccgactaagcattttcacccca
aatgtcctcatgatctccaaacatgccgatggttccctgaaccagtgggcagtcagtttc
gcggaggactctgctttctccactgtgctcagcgtctctcacaagtcacggtactgcggc
caccgcttccacctcaatgacctggcctgtcactcgttactccccctcctcctcaccacc
tcacaccacaacgccttgaggacaccagaggtagacagcattctcgctcctccagaggcc
tgctcctctggtttctctcacccaacatctctgccccgtcggtcgcggcccagccgggtg
tccctaggtgtggtttctcaggatcccaatgcgatctacagtgagctgattttatggaga
gtggaccctgttggcccactatctttgtcaggcggggtgtctgagctagccaggattaat
tctctccatgcatcagcatttgctaatgtagcctggctgcccacactcattcccagcagc
tgtttaggtgtttactgtaactcccccagcgcctgctttgtggcgagtgacggtcactca
ctcaggctgtatcaggctgtcatcgaagccaagaaactcctgagcgagctctccaaccct
gagatatcaaaatatgttggggaggtgttcaacatcatcagccagcaatccacagcaaaa
ccagggtgtattatagagctggatgccattactgactttcaggggaaggagacccagctc
ctgcatgtttttgaggaggatctgatccttggcagagagaaaacagagagcacacaggac
actcctgattctcctcacactgcctctggtgagccgaccttctcagcacgttttttcctg
gtggtggttgaattaaccccgacaggtcgctcactcctgcatatgtggcatctccatctt
gctgctcgacccatcaccatggatgaagccacgacagagaaggatgccaccacagcttct
ccaataaacagccctcagtttaactttgacacattcagttctccagcagctcagaagagt
aaaacctgcacttccaatttgcagagtgcctgtcgcctcagcctcacaacacacagacta
tacagtcaagagatggccctgccagaaggggtagaagccatcagtgtaacaccctcagca
ggtcacctgagtgcatcatgttccctgccagctggccgtgtgccttaccttcttgctact
tcctgttctgatggaaaggtgcgcttctggaggtgtaatgttgtggctacagagtcctcc
agtatggacagcttgttgtaccactgggaggagtggcaactcctggtggaggagaggctt
cccaacagcagtgcagtaagtgtaccaggtcggcccatagaggtgagctgctgtcacact
ggacggattgcagtcgcctacaggcagaccccaaatacaccactgaactcaacacctcat
ccgaactctcatggactgcttactcctcctcccaccctggcatcctccccttacaacacc
cacctgaccccaaccttaactgtacagcgaagcccaaatctcactccaagccacaactta
gcaaacactaaagaaccgttggtccacataagcatcttccagtgtgagtccactggtggt
tcacagtggattctagagcagaccatagtcctggacagcacagatcccacagctaactgt
ggtattagcaatagcacaactggaggtgccagtgttccaagtaaagtggacttctcttta
ccaaatgagaactgtcttggtttcactagtaagagcctggtccatttagactgggtgtcc
caagaggatgggtcacatgttctgactgttggtattgggacaaagatttatatgtatggc
cgtctctctggaaagcctccagaactgggtctgtcatctgatgcaagtagagaccagagc
ttgtctcgtctggttctgcttagatctgtcgatttggtctcctctgttgaaggctcatta
cccatcccagtctccctctcctgggtacgagatggcatcttggtagtagggatggactgt
gagatgcatgtctactcccagtggcagcccccaacaccacccaaacccaatgttgccatt
gcccaagacatagacatcagcagtagtgtctcctccataatctcagctgtcagacagagc
caggaggagggtctcagtcctggggctccaatgtctttactagctcctcccaaaaaggcc
ttgacaagatcaatgatgagcctggctcagaaactcagcgggaagagaacagcttatgac
ctccctgttgagatggaggattctgggctttttgaagcagctcaccaactctttcccact
ctgccccagtaccatcctgtacagttactggagctcatggatctcgggaaggttcaccgt
gccaaagccatcctctcgcacctggtgaaatgcattgctggagaaattgtggcacttaaa
gacagcaccaccaacccagagaaacgtgtgcgctctcgaaccatcagtgctggaggcagc
acagccagggacccgaagatgttcagcaaagtagagaactccactcctgactacacagag
ataagctccatccctcccctgcctctgtactcccttatggcagctgatgaggatacatca
ccaaaaccagataaagtgggcagtgtgagtggagatagtgggcatggttccagtcacaca
gatgcttatgatgagctctttcatacacccagcatagtggacttggaccctctggacagc
gatcaagaggaaccgggcaacaaggttattgacctgtctcagtacagtcctacatacttc
ggtccagaacatgcccaggttctgtccagccacctccttcactccagtttgccaggatta
actcgtatggaacagatgtctctcatggcactggctgacaccatcgctaccacaagcaca
gacctcaaggacagccagggcaagagcaaaggtggagagacactggatgagtgtggtctg
aagttcttgctggccgtcagactgcatactttcctctctacctctctgcctccagcacac
cgagcacagctgctacgacaaggcctgtcaacatgtcattatgcctgggccttccactct
gaagctgaggaggagctgctgaacatgctccctgccctacagaagggagagcccacatgg
cctgaactgcgctccatgggtgtgggctggtggctgcgcagcaccaacaagctacgcaga
tgtattgagaaggttgccaaggcttcttttcagagaagcaatgatcctctggatgcagct
atattttaccttgcactgaaaaagaaggcagtggtctggggattgtacaggtctcagaag
aatgccaaaatgacagactttttccggaacaacttcagcgaggaccggtggaggaaagcc
gcactgaaaaatgctttttctctgctgggaaagcagcgcttccagcattctgcagccttc
ttccttctagccggctcccttaaggatgctgttgaggtgtgtttagagaaaatgcaggac
ctacagctggctctggtaatctctagattgtatgagtctgagtttgagacttcatccacc
tacaaaaagatcctccagagacatgttctgggccaagacaaacagattccagcccaccag
gacccgttcctgcggagcatggctcactgggtgctggaagactacagcagagccttggac
actctacttgagcagcctgctaacagcaccagctctgggtccactgagagcaaacgtgat
gccggttccctttctgtgtctacgtgtaaccctgaggttttcaacttttacacctacctc
cgtacccacccactcctccttcgtcgacattttggctcctcagacaaggctaaagttggc
ctgactgctgagggtcgcagggctgactccattagcctggaggagagaaggctgtttttc
acagctgcgtatgcacatctacaagctggctgccccatgctcgcactggaagtcctctcc
aagatgcccaaagtccgcaagcattccaaactcctgaaccaggaggatacaggcatcacg
gctgaacagctcagtgttgggagtaagaatgggcaagcatcagacccagattggtctcag
ccagctctgaacggctacgagtcagatgggaacagcttatctaacagtaaatcagattca
gtgttaagttttgactggagccaaccgtcactgacacttccagatgagtccctggagctg
aagtgggacagtgacaaagatgatgatgaagacgaggatgaggaccaagaagaaactaaa
aatggtaagagcagtagaactgcagacagcagcagtgtgttccaggacacgcaggatgcc
atgtcgccgctaatggggacagtgacgggagaagacagtgaggacagcagtgacttcatc
gcaccatctgatgacatcttggcagcccagctgaagtttaccgcctgcttgaagatcatg
accaatgagctccggacgctgtcaacagggtatgaactggatggggggaaactacgttac
cagctctaccagtggttagagagagaggtggtggctctccagcattgctgcagctacaag
ccctgcttgccagatctgtctgtccagagtgatgtccctgtctctgggttggtggaggag
gaacagcctggcagcccacgtggtgacagccagaggagcaggaggcactggctgcagagt
aaccagcccttactgaggatgtttctgagctactgcagcttgcacggctcccatggtgga
ggactggcttctgtacggatggagctcatactgttgcttcaagagtctcaccaggacgag
tctatccaaccagtggtgacattaagttcccagcccacctctatccctcttctgatggct
tgcacatccaatgtaaagacagtggtggccaatcccatcgtctacctgaccaacctgact
catgacatcttgcagaccatcaatgcactagactctcctccgcatcctgatgttgttaac
aatgagatctatgtgatgcacaccttggctgcttccttgtctgcctgtatatatcaatgt
ctgtgtgatggccacacctacagttcctccactgtcaaccatttcacagggattgtgtat
cagagtgtattgctgtctcagaagcaaccagtcaggactgtcagcatggatgagtctgtt
cagcccaacacttctcctgcacagtggccaggtatcgcctctctgattcgtctcttgagc
tcggcaggcgaggagagccagccaggcttggctgtgctgctctgtgagatcctgactgct
gtcttcctcagtctgtttgttcacggcatggccactcactccagcaacgagctgtttcgc
atcgtggcccaccctctcaacagcaagctttgggtgacggtgtttggaggaggcgctcgg
acccctgtcatagagaaacctaacagcccagcaagaacacccccaccagcctccccgagt
ggctcagacaggaagtccaggcgattcaagcttctatcatcacgcagtggatccaaagag
gagtctgggatagagcgggaggggccaatcagtcctaagcatgtccctgtagtagaacaa
gaagccacctccatctttaaagaacgatttgtccctccagagctcagtatctgggattac
tttatcgccaagcctttcctgccaccttctgaaaacagaattgagtatgactctgaggag
agccagggcagtcaagatgaggacgaagatgatgatgaatttgaagatgtgtttgacccc
aactccccacaacgagagcattcgaaccacaattcgtacagttggtgtttaatgcgtctg
gcaatggttcagctggtgttggtcaagctcaagtccttttatccaatggcaggatatgat
ctattagatctgcctgtgggctctcctctgtgtcacgctgtgctgaagacgctgcagcgc
tgggagcaggtgctgcaaaaaaggctggagatcttcgggggccccccttccaaatacatc
tccacacacctccaggacgaaacatccacacctggccctgccctgctcagacacaaggtc
ctatttgaaccgtctaacaccccattcaggactaaccaccattcagcgctgccagtgaaa
cgtttgtggcagtttctggtcaaacaggaagaagtgcaggagactttcattcgaaacatc
ttcaccaagaaacgggacccgaatgagactgagtcagatctgggctgccccggaggaaag
gcacgcatcatccacaaggaatctgacatcatcacagcctttgccatcaacaaggcaaat
cggaactgtttagtcatggcctccacccatgacattcaagagctggatgtgtcatccatc
ttggccacacagatcttgacatggatcgatgatgatgaggctgaagccaaaggtgttgga
ggcgatgacttcctggtggtccatgcacgtgatgattttgctgccctccatggcaccaca
ccatacacccacagtagccctggcacacccatcaatatgccgtggctgggaggcctgcag
acaggcaggggcgcatctgtgatgatcaagagaaatatcaataatgtgagaagaatgacc
tcacatcccacactgccttactacctgacaggagctcaggatggtagcgtgaggatgttc
gaatggggtcactcccagcagatcatctgcttcagaagtccaggcaactccagagtcacc
aggatacgattcaaccaccaaggaaacaagttcggtatcgtagatgctgatggaggtttg
agtctctggcagaccaacacaagtggtaatgctcccaaaccattcctgacgttgcagtgc
cacaacaagacagctcatgactttgtctttgtgggctcctcctccctcatcgccactgcg
ggtctttcaacagacaacaggaacgtgtgtttgtgggacactcttgtgactcctgctaac
agccttgtacatgctttctgttgccatgagtcgggcgctactgtgctcgcgatggccccc
aggcagcagctgcttatcacaggtgggaggaagggctggatcagcgtcctggagcttccc
cacaggcaccagcgccaaagcttccaggcccacgactcaccggtcaaagcgctggctgtt
gatccaattgaggactgttttatcagcggatcagcagagggcaacattaaggtttggagc
ctggccacgcagtgtctcctctacgccttcccaaatgaacacgcccgccagtcgctgttc
aggaacctcggtacgggtgtcatgcagatcgaggtgggacccaccaatcacatcttttcc
tgcggtgcagacggaaccatgaagatgaggatccttcccaaccgctacagtgttgtcaac
aacaacaaccacagcaacctcaagaacgatgtcaaattcattatatag
DBGET
integrated database retrieval system
