Lates calcarifer (barramundi perch): 108882236
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Entry
108882236 CDS
T04895
Name
(RefSeq) chondroitin sulfate N-acetylgalactosaminyltransferase 1
KO
K00746
chondroitin sulfate N-acetylgalactosaminyltransferase 1/2 [EC:
2.4.1.174
2.4.1.175
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf00532
Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
lcf01100
Metabolic pathways
Module
lcf_M00058
Glycosaminoglycan biosynthesis, chondroitin sulfate backbone
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
108882236
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
lcf01003
]
108882236
Enzymes [BR:
lcf01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.174 glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase
108882236
2.4.1.175 glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase
108882236
Glycosyltransferases [BR:
lcf01003
]
Glycan extension
O-Glycan
108882236
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CHGN
Glyco_transf_7C
Glyco_tranf_2_2
ATP-synt_D
PycTM
Ribosomal_S20p
FlxA
Motif
Other DBs
NCBI-GeneID:
108882236
NCBI-ProteinID:
XP_018530138
UniProt:
A0A4W6CBA8
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Position
LG13:5605461..5613308
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AA seq
535 aa
AA seq
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MFKRWLLALVARVGLIVLGLCCCLSLFYLLACKKPVSHSSQQSLLWSGGATSKEGYMALL
QEREDSHRHYINSLTKQIAQLKEALQERTQQLQESLDKAKTKGILPQGLESLHKTPTQSD
LKEFFRSQLNQAEVNSGVKLPSEYAVIPFDTFTLRRVYQLETGLTRHPEERPARRDRRDE
LIGTVETALHVLNGPQQHTDNIRRKRTYAPSDFIEGLTRTERDRGTVYELMFKGDGPQDF
TQIVLFRPFGPVMKVKSESVDTHRMLINVIVPLSKRADTFRQFINNFREVCIQQDGRVHL
TVVYFGRDQIDQVKATLDQTTRETRFRSFTLIQLNEEFSRGRGLDVGARAWRRSQNVLLF
FCDVDIHFTADFLTSCRLNAEPGKKVYYPVLFSQYNPSIIYSNQTLLPSVHQQLVIRKET
GFWRDFGFGMTCQYRSDFINIGGFDRSIKGWGLEDVHLYRKYLHSKLMVIRSPSRGLFHL
WHEKNCADELPPDKYKMCMQTKAMSEASHGQLGELFFKREIEAHLNSMKQINKDN
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgtttaaacggtggctgctggccctggtggcccgtgtcggcctcatagtgctgggcctc
tgctgctgtctgtcgctgttctacctcctggcctgcaaaaaacctgtgtctcacagcagc
cagcagtctctgctgtggtctggaggggccaccagtaaggagggatacatggctttgttg
caggagagggaggactctcacaggcattacatcaacagcctgacaaagcagatagcccag
ctgaaagaggctctccaggagaggacgcagcagctccaggagtccctggataaagccaaa
accaaagggattttgcctcagggtctggagagtctgcacaagaccccgacacagtctgac
ctgaaggagttcttccgctcccagctgaaccaggcggaggtgaactcaggtgtaaagctg
cccagtgaatatgcagtgattccttttgacacttttactctgcggagggtataccagctg
gagacagggctgaccaggcaccctgaggagaggcctgcaaggagagaccgcagggacgag
ctgataggcaccgtggaaacagctctgcacgtcctgaatggacctcagcaacacacggac
aacatcaggcggaagcgcacgtacgccccttcagacttcatagaggggttgactcgtaca
gagcgggacagaggaacagtttatgagctgatgtttaaaggcgacggcccacaggacttc
acgcagatcgtgctcttcaggccatttggtcccgtgatgaaggtgaagagcgagagtgtg
gacacacacagaatgctaatcaacgtcatcgtacctctctccaagagagcggacacattc
aggcagttcatcaacaacttcagagaagtgtgcatccagcaggatggcagagttcatctc
accgttgtctactttggtcgagatcaaatagaccaggtgaaagccacgctggaccagacc
acaagagagactcggttcaggagcttcacactgatccagctgaatgaggagttttctcgt
ggccgaggcttagacgtgggcgccagggcttggaggcggagccagaatgtcctgctcttc
ttttgtgatgttgacatccacttcaccgctgacttcttgacttcctgtcgactcaacgcg
gagcctggtaagaaagtgtactatccagtgctcttcagccaatacaacccatctatcatc
tacagtaaccagacgcttctaccctctgttcaccagcagctggtgattaggaaggaaact
ggattctggagagactttgggtttggtatgacatgtcagtacaggtctgatttcatcaac
ataggtggttttgaccgtagcatcaaaggttgggggttggaggacgtgcacctgtacagg
aagtaccttcacagtaagctaatggtgattcgctccccgtctcgcggccttttccacctg
tggcacgagaagaactgcgcagacgagctccccccggacaagtacaagatgtgcatgcag
accaaggccatgagcgaagcctcgcacggccagctgggggagctcttcttcaaaagagag
atagaggctcatttgaactccatgaagcagataaacaaggacaactga
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