Lates calcarifer (barramundi perch): 108882265
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Entry
108882265 CDS
T04895
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1 isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04517
IgSF CAM signaling
lcf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
108882265
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108882265
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
lcf04812
]
108882265
Cytoskeleton proteins [BR:
lcf04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
108882265
Intermediate filaments
Intermediate filament-binding proteins
108882265
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
PH_11
PMC2NT
SOS1_NGEF_PH
SCAR_helical
Motif
Other DBs
NCBI-GeneID:
108882265
NCBI-ProteinID:
XP_018530188
UniProt:
A0A4W6E0N1
LinkDB
All DBs
Position
LG5:complement(279187..313097)
Genome browser
AA seq
2351 aa
AA seq
DB search
MMTTVAAEYDHMELQQQYSSSNDTVNNRWDDDWDNENSSARLFERSRIKALADEREAVQK
KTFTKWVNSHLSRVSCRITDLYMDLRDGRMLIKLLEVLSGERLPKPTKGRMRIHCLENVD
KALQFLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQDISVETEDNKEKRSAKD
ALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHYNLQNA
FNLAEQHLGLTKLLDPEDISVDHPDEKSVITYVVTYYHYFSKMKALKVEGKRIGKVLDNA
IETEKMIEKYESLASDLLEWIEQTIIILNNRKFANSLVGVQQQLQAFNTYRTVEKPPKFT
EKGNLEVLLFTIQSKMRANNQKVYMPREGKLISDINKAWERLEKAEHERELALRTELIRQ
EKLEQLARRFDRKAAMRETWLSENQRLVSQDNFGFDLQAVEAATKKHEAIETDIAAYEER
VQAVVAVAKELEVERYHDIKRIAARKDNVIRLWEYLLELLKARRLRLEMNLGLQRVFQEM
LYIMDWMDEMKMLLLSQDYGKHLLGVEDLLQKHALVEADIAIQADRVKAVTTNANKYSIN
DSGYKPCDPQVIQDRVAHLEFCYQELTQLAAERRARLEESRRLWKFFWEMAEEEGWIREK
EQILSSLEHGKDLTGALRLLSQQRALEDEMSGRAGHLQHTIAEGQAMVQAGHFGATKIQE
RIADLQAQWAALEQLAAVRKKKLEEALALHQFQADADDVDAWTLDALRIVSSGETGHDEF
STQALVRKHKDAAAEVASYRPVIDSLHEQASSLPKEEAESEEVRGRLAGIEERYKEVSEL
TKLRKQALQDALALYKMFSEANACEVWIDEKEQWLNSMEIPEKLEDLEVIQHRFESLEPE
MNNQASRVAVVNQIARQLIHSGHPSEKDIKTQQDKLNNRWSQFRDLVDQKKESLNSALGV
QNYHLDCNETKSWIKEKTKVIESTQELGNDLTGVMALQRKLTGMERDLAAIEDKLGDLRG
EAQRLAEEHPDQAKAITGRLAEITAVWEEMKNTLKNREESLGEARKLQQFLRELDDFQSW
LSRTQTAIASEDMPNTLAEAEKLMAQHEGIKNEIQNYEEDYQKMRDMGEMVTQGQTDAQY
MFLRQRLQALDTGWNELHKMWENRQNLLSQSHAYQLFLRDTKQAEAFLNNQEYVLAHTEM
PTTLEGAEAAIKKQEDFMTTMDANEDKINSVVEAGRRLASDGNVNAERIQERVTSIDDRH
KKNREAAVELLMRLKDNRDLQKFLQDCQELSLWINEKMLTAQDMTYDEARNLHSKWLKHQ
AFMAELQSNKEWLDKIQKDGMLLVSEKPETEAVVKEKLSALHKMWEELESTTQTKAQCLF
DANKAELFTQSCADLDKWLVGLEGQIQSDDYGKDLTSVNILLKKQQMLENQVEVRQREVV
ELQSQVKALGQEVKDTDEVDGRRQLVERKFQELLEPLRRRRNFLVASREVHQFNRDVEDE
ILWVQERMPVATSTDHGHNLQTVQLLIKKNQTLQKEIQGHQPRINDILERSQSLLQDESS
NADIIRQRLADLQELWRQLREEAERRHGRLEEAHKAQQYYFDAAEAEAWMSEQELYMMSE
EKAKDEQSAVTMLKKHQIVEQAVEDYAETVHQLSKTSRGLVADGHPESERISMRQSQVDK
LYAGLKDLSEERRGKLDERLRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQE
RFREFARDTGNIGQERVDAVNRLADELINTGHGDAATVAEWKDGLNEAWADLLELIDTRT
QILAASFELHKFYHDAKEILGRILDKQKKLPEEFGRDQNTVETLQRMHTTFEHDIQALGT
QVRQLQEDAVRLQSAYAGDKADDIQRRESEVLEAWRSLLEACDGRRLRLLDTGDKFRFFS
MVRDLMLWMDDVIRLIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTACIELGKALL
ARKHYASEEIKEKLLQLTDKRKEMIDKWEDRWEWLRLILEVHQFSRDAGVAEAWLLGQEP
YLSSREMGQSVDEVEKLIKRHEAFEKSAATWEERFSALERLTTLELLEVRRQQEEEERRR
KPPTPEPAVIQQEESQQQSGVITQNGLPSDQDSPRDGVDGGDLVNGMAERSSKEPSPTPS
PTSGRKSKTSQSSTLPSKNQDSSSSQLEGFLHRKHEWEGHNKKASNRSWHNVYCVINNQE
MGFYKDSKAAGQGVPYHGELPISLKEATCDVASDYKKKKHVFKLRVTDGNEYLFQAKDEE
EMSTWIQAILNASATDRSDIQGSNPGTPASGRAQTLPAAVTLTTESSPGKREKDKEKDKE
KRFSLFSKKKQ
NT seq
7056 nt
NT seq
+upstream
nt +downstream
nt
atgatgacgacggtggccgccgagtacgaccacatggagctgcagcagcagtacagcagc
agcaacgacacggtcaacaaccgctgggacgatgactgggacaacgagaatagctcggca
cgactctttgaacgctcccgcatcaaggcgctcgcagatgagcgggaggcggtccagaag
aagaccttcactaagtgggtgaactctcacctgtccagagtctcctgcaggatcacagac
ctgtacatggacctgagggacggacgcatgctcatcaagctgctggaggttctgtcagga
gagaggctgccgaagccgaccaaaggacggatgcggatccactgtctggagaacgtggac
aaagctctgcagttcctgaaggagcagcgggttcacctggagaacatgggctctcacgac
atcgtggacggaaaccaccgcctgacgctgggcctcatctggaccatcatcctccgcttc
cagatccaggacatcagtgtggagactgaagacaacaaagagaagagatcagctaaagat
gctctgctgctgtggtgtcagatgaagacagcagggtatcctaacgtgaacatccacaac
ttcaccaccagctggagggacggcatggccttcaacgctctcatccacaaacacaggcct
gatctgatcgactttgacaaactgaagaagtccaacgctcactacaacctgcagaacgct
tttaacctggcagagcaacacctgggcctcaccaagctgctggacccagaagatatcagc
gtggaccatcctgacgagaagtcggtcatcacctacgtggtgacctactaccactacttc
tccaagatgaaggctttgaaggtggagggcaaacgcatcggaaaggtgttggacaacgcc
atcgagacagagaagatgatcgagaagtacgagtctctggcctcagacctgctggagtgg
attgaacagaccatcatcatcctcaacaacaggaagtttgccaactctctggttggggtc
cagcagcagctccaggccttcaacacctacaggactgtggagaaacctccaaagttcaca
gagaaggggaacctggaggttcttctcttcaccatccagtctaagatgagagccaacaac
cagaaggtctacatgccccgagagggaaaactcatctcagacatcaacaaggcctgggaa
cgactggagaaggcagagcacgagagggagctggctctgaggacagagctgattcgtcag
gagaaactggaacagctggcccgacgcttcgaccgcaaggcggcgatgagagagacctgg
ctcagtgaaaaccagagactggtgtcacaggacaactttggtttcgaccttcaggccgtt
gaggcagccaccaagaagcacgaggcgatcgagacggacatcgctgcgtatgaggagcgc
gtccaggctgtggtcgctgtagcaaaggagctggaggtggagcgctaccatgacatcaaa
cgcatcgcagccaggaaggacaatgtgatccggctgtgggagtacctgctggagctgctg
aaggcccgcagacttagactggagatgaacctgggcctgcagagggtcttccaggagatg
ctctacatcatggactggatggacgagatgaagatgctgctgctgtctcaggattatggg
aagcatctgttgggtgtggaggacctgctgcagaaacacgccctggtggaggccgacatt
gccatccaggctgaccgggtgaaggcggtcaccaccaatgccaacaagtactccatcaat
gacagcggctacaaaccctgcgaccctcaggtcatccaggaccgggtggcccacctggag
ttttgctaccaggagctgacccagctggccgcagagcgccgtgcccgcctggaggagtcc
cgccgcctctggaagttcttctgggagatggcagaggaggagggctggatccgtgagaag
gagcagatcctgtcctctcttgagcacggcaaggacctgacaggggcactgcgcctcctc
agccagcagcgcgccctggaggatgagatgagcggccgcgctggacacctccagcacacc
atcgctgagggccaggccatggtacaggccggtcactttggtgccactaagattcaggag
cgcatcgctgacctgcaggctcagtgggcggcgctggagcagctggcagcggtgaggaag
aagaagctggaggaggctctggccctgcaccagttccaggctgatgcagatgatgttgat
gcctggacactggacgctctccgcatcgtctccagtggagagacgggtcatgatgagttc
tccacgcaggcgctggtcaggaaacacaaggacgcagcagcggaggtcgccagctaccga
cccgtcatcgactcgctccacgagcaagccagctctctgcccaaagaggaagcagagtcg
gaagaggtgcgtggtcggctggccggcatcgaggagcgctacaaggaagtgtcagagctg
acgaagctgaggaagcaggcgttgcaggacgctctggctctctacaagatgttcagtgag
gccaacgcctgtgaggtgtggatcgatgagaaggagcagtggctgaacagcatggagatc
cctgagaaactggaggacctggaggtcattcagcataggtttgagagtctggagccagag
atgaacaaccaggcgtctcgtgttgcggtggtgaaccagatcgcccggcagctgatacac
agtggtcacccgagtgagaaagacatcaagacccagcaggacaaactcaacaacagatgg
agccagttccgtgacctggtggaccagaagaaggagtccctgaactcagctctgggtgtg
cagaactaccaccttgactgcaatgagaccaagtcctggatcaaagagaaaaccaaagtc
atcgagtccacccaggagctgggcaacgatctcactggagtcatggccctgcagcgtaaa
ctcactggtatggagcgtgatctggctgccatcgaggacaaactgggtgacctgcgaggc
gaggcccagcggctggcggaggagcatcccgaccaggctaaagccatcacaggccgtctg
gctgaaatcactgctgtctgggaggaaatgaagaatacactaaagaaccgtgaggagtct
ctgggcgaggccaggaagctgcagcagttcctgcgtgagctggatgacttccaatcctgg
ctctcccgcactcagacggccattgcctccgaggacatgccaaacacgctggctgaggcc
gagaagctgatggctcagcacgaaggtatcaagaacgagatccagaactatgaggaggac
taccagaagatgcgggacatgggggagatggtgacacagggccagacggacgctcagtac
atgttccttcgacagaggctgcaggcactcgacaccggctggaatgagctgcacaagatg
tgggagaaccgacagaacctgctgtcccagtcccacgcttaccagctgttcctcagggac
acaaagcaggccgaggccttcctcaacaaccaggaatatgtcctggcccacaccgagatg
cccacaactctggagggcgcagaggccgccatcaagaaacaggaggacttcatgaccacc
atggacgccaacgaggacaagatcaacagcgtggtggaggccggcaggcggctggccagt
gacgggaacgtcaacgccgaacgtatccaggagagagttacctccatcgacgacaggcat
aagaagaacagggaggctgcagtggagctgctgatgagactgaaggacaacagagacctg
cagaagttccttcaggactgccaggagctctctctgtggatcaatgagaagatgctcaca
gctcaggacatgacctacgatgaggccaggaacctgcacagcaagtggctgaagcaccag
gccttcatggctgaactgcagtccaataaagagtggctggacaaaatccagaaggacggc
atgttgcttgtgtctgagaagccggagactgaggcggtggtgaaggagaagctgtcggcg
ctccacaagatgtgggaggagctagagtcgaccacgcagaccaaggctcaatgcctgttc
gacgccaacaaggcagaactgttcacccagagctgtgccgacctagacaagtggctcgtt
ggcctcgagggtcagatccagtccgacgactacggcaaagacctgacctccgtcaacatc
ctgctcaagaaacaacagatgctggagaaccaggtggaggtgcgtcagagggaggtggtg
gagctgcagagccaggtgaaggctctgggtcaggaggtgaaggacactgatgaggtggac
gggcggaggcagctggtggagaggaagttccaggagctgctggagccactgagacgccgc
aggaacttcctggtggcgtcgagagaagttcaccagttcaaccgagatgtcgaggatgag
atcctgtgggttcaggagaggatgcctgtggccacgtccactgaccacggacacaacctg
cagacggtccagctgctcatcaagaagaaccagactctgcagaaggagatccagggccat
cagcctcgtataaacgacatcctggagcgcagtcagagcctcctgcaggacgagtcctcc
aatgccgacatcatccgtcagcgcctggccgacctgcaggagctgtggaggcagctgagg
gaggaggctgagcgtcgccacggccgcctggaggaggcacacaaggcccagcagtactac
tttgacgccgccgaggccgaggcctggatgagtgagcaggagctgtacatgatgtcggag
gagaaggccaaggacgagcagagcgctgtcaccatgctgaagaaacatcagatcgtagag
caggcggtggaggactacgccgagaccgtccaccagctgtccaagaccagcagaggactg
gtagctgatggacacccagagagcgagcgaatcagcatgcgtcagtctcaggtggataag
ctttatgccggcctgaaggacctgtccgaggagaggcggggcaaactggacgagagactc
cgcctcttccagctgaaccgagaggtcgacgacctcgagcagtggatcgctgagcgggag
gtggtggccgggtcacatgagctgggacaggactacgaacatgtcaccatgttgcaggag
cgtttccgggagtttgcccgggacacggggaacatcggtcaggagcgcgtggacgccgtc
aaccgtctggcggacgagctgatcaacaccgggcatggcgatgcagcgacggtggcggag
tggaaggacgggctgaatgaggcctgggctgacctgctggagctcatcgacaccaggaca
cagatcctcgctgcctccttcgagctccacaagttctaccacgacgccaaggagatcctg
ggacgcatcctggacaaacagaagaagctgcctgaggagtttggccgagaccagaacacg
gtggagacgctgcagaggatgcacaccaccttcgaacacgacatccaggccctgggaaca
caggtgaggcagctgcaggaggacgccgtgcgcctccagtcggcgtatgctggagacaaa
gccgacgacatccagcggagggagagcgaggtgctggaggcctggaggagtctgctggag
gcctgcgacggacgccggctccgcctcctcgacaccggcgacaagttcaggttcttcagc
atggtccgagacctgatgctgtggatggacgacgtgatccggctcatcgaggcccaggag
aaacccagagacgtgtcgtcggtggagctgctgatgaacaaccaccagggcatcaaagca
gagatcgacgcccgaaacgacagcttcactgcctgtatcgagctggggaaggccctgctg
gcccggaaacactatgcctccgaggagatcaaagagaagctgctgcagctgacagacaag
aggaaagagatgatcgacaaatgggaggaccgatgggagtggctccgactcatcctggag
gtgcaccagttctcccgggacgccggtgtggctgaggcctggctgctgggtcaggagccg
tacctgtccagcagggagatgggtcagagcgtggacgaggtggagaaactcatcaaacgc
catgaggccttcgagaagtctgccgccacctgggaggaacgcttctctgctctagagcgt
ctgactacattggagctgttggaggtgaggaggcagcaggaggaggaggagaggaggagg
aagcctccgactccagaaccagctgtgatccagcaggaggagtctcagcagcagagcgga
gtcatcactcagaacggactgccgtcagaccaggactctcctcgggatggagtggacggt
ggagatctggtgaacggcatggccgagcggagctccaaggagccgagtccaaccccgtcg
ccgacctctggcaggaagagtaagactagccagtcatccacgctgcccagcaagaaccag
gactcgtcctcgtctcagctggagggcttcttgcaccgcaaacacgagtgggagggccac
aacaagaaggcgtccaacaggtcgtggcacaacgtgtactgcgtcatcaacaaccaggag
atgggtttctataaggacagcaaggcggcgggtcagggagtcccgtaccacggagagtta
cccatcagcctgaaggaggcgacatgtgacgtggcctcagactacaagaagaagaaacac
gtcttcaaactcagagtcactgatggtaacgagtatctgttccaagccaaagatgaagag
gagatgagcacctggatccaggccatcctgaacgccagcgccaccgaccgctccgacatc
cagggcagcaacccgggcacgccagcgtccgggcgcgctcagacgctgccggccgccgtc
acactcaccaccgagtcgagtcctggcaagagagagaaggacaaagagaaggacaaggag
aaacgcttcagcctgttcagcaaaaagaaacagtag
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integrated database retrieval system
