Lates calcarifer (barramundi perch): 108882299
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Entry
108882299 CDS
T04895
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03013
Nucleocytoplasmic transport
lcf03015
mRNA surveillance pathway
lcf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108882299
09122 Translation
03013 Nucleocytoplasmic transport
108882299
03015 mRNA surveillance pathway
108882299
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108882299
03041 Spliceosome [BR:
lcf03041
]
108882299
03009 Ribosome biogenesis [BR:
lcf03009
]
108882299
03012 Translation factors [BR:
lcf03012
]
108882299
Enzymes [BR:
lcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108882299
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108882299
mRNA cycle factors
Stress granule specific factors
108882299
Spliceosome [BR:
lcf03041
]
Complex C
Other components
EJC/TREX
108882299
Ribosome biogenesis [BR:
lcf03009
]
Eukaryotic type
90S particles
Helicases
108882299
Translation factors [BR:
lcf03012
]
Eukaryotic type
Initiation factors
eIF-4
108882299
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Cas3-like_C_2
AAA_30
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
108882299
NCBI-ProteinID:
XP_018530256
UniProt:
A0A4W6DI67
LinkDB
All DBs
Position
LG5:70151..74421
Genome browser
AA seq
406 aa
AA seq
DB search
MAAAGAQGRKRILKEEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQ
QRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKV
LLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLV
LDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDE
LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVS
SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI
GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgccggggcgcagggcaggaagaggatcctgaaggaggaggacatgaccaag
gtggagtttgagaccagcgaggaggtggacgtcacccccaccttcgacaccatgggcctc
cgggaggacctgctccgcggcatctacgcctacggttttgagaagccgtcagcgatccag
cagagagccatcaaacagatcatcaaaggcagagacgtcatcgctcagtctcagtctgga
acaggaaagacggccactttctgtgtgtcagtgctgcagtgtctggacatccaggtgagg
gagacccaggctctgatcctcgctccaaccagagagctggccggacagattcagaaggtg
ctgctggctctgggagactacatgaacgttcagtgtcacgcctgtatcggagggaccaac
gtgggtgaggacatcaggaagctggactacggtcagcacgtggtcgccgggacacctgga
cgagtgtttgatatgattcgccgcaggagtctgaggacaagagcgatcaagatgctggtc
ctggacgaggccgatgagatgctgaacaaaggttttaaggagcagatctatgacgtgtac
cgttacctgccccccgccactcaggtggtcctgatcagcgccacgctgccacacgagatc
ctggagatgaccaacaagttcatgacagacccgatccgaatcctggtcaaacgagacgag
ctgaccctggaggggataaagcagttcttcgtggccgtggagagggaggagtggaagttc
gacactctgtgtgatctgtatgacactctgaccatcactcaggccgtcatcttctgcaac
accaagaggaaggtggactggctgacggagaagatgagggaggcgaacttcacggtgtcg
tcgatgcatggagacatgccgcagaaagagagggagtccatcatgaaggagttcagatca
ggagccagtcgtgtgttgatctcaacggacgtttgggctcgaggtctggacgttcctcag
gtttctctgatcatcaactacgacctgcccaacaacagagagctctacatccacaggatt
ggtcgatccggccgttacggtcgtaaaggtgtggccattaactttgtgaagaacgacgac
atcaggatcttgagagacatcgagcagtactactccacccagattgacgagatgcccatg
aacgtggctgacctgatctga
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