Lates calcarifer (barramundi perch): 108882454
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Entry
108882454 CDS
T04895
Name
(RefSeq) intraflagellar transport protein 57 homolog
KO
K04638
intraflagellar transport protein 57
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
lcf03037
]
108882454
Cilium and associated proteins [BR:
lcf03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex B2
108882454
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Paralog
Gene cluster
GFIT
Motif
Pfam:
IFT57
Mod_r
MCPsignal
Fusion_gly
Spectrin_SYNE1
COG3_N
DUF4407
Prominin
Spectrin_1st_PEPL
DUF3837
Spc7
DUF745
KxDL
Exonuc_VII_L
DUF1664
ISG65-75
Adhesin_P1_N
Med9
HBM
Motif
Other DBs
NCBI-GeneID:
108882454
NCBI-ProteinID:
XP_018530473
UniProt:
A0A4W6CLA2
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Position
LG4:1557895..1564495
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AA seq
415 aa
AA seq
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MADDGRRGDEDDRGPGAAHQVFVVMECLLEKLKVLNYEEEVLAKHNMKNLSRHYFVSSPY
LASNPGEQFYMFTIIAAWLINVAGRPFAEPQEYDEPNATVSNILAELRAFGVKVDFPPSK
LKSGSGEYVCLVLDRLAEEALRRRGFSFRRPNYPTENTEEESVIEDDAELTLSKVEEEMI
EEPDDEEENVMDLEALKLRTTHTEAEPSTKPDEILESTVDAAEWNLEVERVLPQLKVTIK
TDNKDWRIHVDQMHQHRDGIKSSLKEANSYLDKLQEDIGKTLEKVSSREKYINNQLEHLI
QEYRSAQAKLSEVKERYQQGSGGVTERTRILAEISEELDKVKQEMEEKGSSMSDGAPVVK
IKQSLTKLKMEIVQMDVRIGVVQHTLLQAKLKEKSNMTRDMHATNIPEPAAGPFA
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgacggtagacggggagatgaggatgaccgcggccccggagcagctcaccag
gtgtttgtggtgatggagtgtttgctggaaaagctgaaggtgctaaattatgaggaggaa
gttctggccaaacacaacatgaagaacctgtccagacattattttgtctccagtccatat
ctggcatccaacccgggcgagcagttctacatgttcaccatcatcgcagcgtggctcatc
aacgtggcagggaggccgttcgctgagcctcaggagtacgacgaacccaacgccaccgtg
tccaacatcctggcagagctcagggcttttggtgttaaggtggacttcccgccctccaaa
ctgaaatcaggttcaggcgagtacgtctgcttggtgctggaccgactggctgaggaggct
ctgaggaggagggggttctccttcagaagaccaaactacccgacagaaaacacagaggaa
gagtctgtgatagaggacgacgcagagctcactctcagcaaagtcgaggaggagatgatc
gaggagcctgatgatgaggaggagaacgtgatggatctggaggctctgaagctgcggacc
actcacactgaagcagaaccgtcgaccaaacctgacgagattctggagtcgacggttgat
gcagcggagtggaacctggaggtggagagagtcctgcctcagctcaaagtcaccatcaag
acagacaacaaggactggaggatccacgtggaccagatgcaccaacacagagatgggatc
aagtcttcgctcaaagaagccaacagttacctggacaaactgcaggaggacatcggtaag
actctggagaaggtgagcagcagagagaaatacatcaacaaccagctcgaacacctgatc
caggagtaccgcagcgctcaggccaaactcagcgaggtcaaggaacgataccagcagggc
agcggaggagtgacagaaaggaccagaatcctggctgagatcagcgaggagctcgacaag
gtgaagcaggagatggaggagaaaggcagcagcatgtctgacggagctcccgtggtgaag
atcaagcagagtctgacgaagctgaagatggagatcgttcagatggacgtgaggatcggc
gtcgtccagcacacgctgctgcaggccaaactcaaagagaagtccaacatgacgcgcgac
atgcacgccaccaacatccctgagcccgccgccgggcccttcgcttag
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