Lates calcarifer (barramundi perch): 108882485
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Entry
108882485 CDS
T04895
Name
(RefSeq) peroxisome assembly factor 2
KO
K13339
peroxin-6
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04146
Peroxisome
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
108882485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108882485
Membrane trafficking [BR:
lcf04131
]
Autophagy
Pexophagy
Other pexophagy associated proteins
108882485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
AAA_16
AAA_33
TIP49
AAA_22
PEX6_4th
RuvB_N
TsaE
AAA_5
DUF815
Vps4_C
AAA_7
NPHP3_N
RNA_helicase
AAA_18
nSTAND3
Mg_chelatase
AAA_19
AAA_25
AAA_17
AAA_28
AAA_24
Parvo_NS1
IstB_IS21
AAA_14
PhoH
SLFN-g3_helicase
Glyco_hydro_19
Motif
Other DBs
NCBI-GeneID:
108882485
NCBI-ProteinID:
XP_018530517
UniProt:
A0AAJ7LRT1
LinkDB
All DBs
Position
LG5:1521271..1530805
Genome browser
AA seq
1024 aa
AA seq
DB search
MAVQVELGLRAPGGRVFYCAFTPTTEEETAGCGGRNSSRADTESRSRVRLYTSRFFLRHH
GLQRLGSSGTVRALEPVSLDRVVLGARSRQSLRWAGAEQFTGGLLELCRPGQWLLARQGD
PLLLPRHLREDPGQQQLSDLLVLECSPVTQGRITADTSLVLTDCWDSADPPGAPPLCRPL
RLCVSDFAHYADGLGGGRSLLDNRKLLGSGFSGILQALECRVDVRVVDAQRWVRVRGQQG
AAMDVDSCVFVSKQLLLRLGLFNQEWVKLSRLGGSSRPSTAQTDVRGSVCGERLVSVVVV
DLTQSPDLQNHDEVGFISATLWFNMTEGEMIPVNSCTLRMKRWRLSPPESSGRSDSSCRS
ASPPFASELHIQPVVSPLYNNISCYDNLLSEHFDTPRLVSQGDILSVPAEKHPDLLENNS
EGIHRCPVLFFRVQKVCPSAEREQQEEEGGGGGGAHLADRVHTSLYLGASTNSSVPCCSV
EGASLWSSLSPPGLNKTVDLLSSIILPHLHHSGSLSGCTVLLHGPAGSGKMTAVSAASRR
LNIHLLKVDCVSVCADTPAASEVKLTSVFQRADALRPCVLLLRNLHLLLRSRGAAEEDGR
VGAALCQLLSSAPTSVVVVATVCRPRDLSAGVMSAFVHQVALESPTEDQRRSMLVSLSRD
LHLGRDVNLERLAKLTAGFVLGDLRALLAEAGRAACRRLIHTCGDRQEEDLCASGVTVLN
RDFTSALETLQDAQSKAIGAPKIPNVRWEDVGGLQQVKKEILDTVQLPLQRPELLSLGLN
RTGVLLYGPPGTGKTLLAKAVATECSMTFLSVKGPELINMYVGQSEENIREVFSRARSAA
PCVVFFDELDSLAPSRGRSGDSGGVMDRVVSQLLAELDALHSSTGVFVIGATNRPDLLDQ
SLLRPGRFDKLVYVGINEDRVSQLHVLQAILRKFQLDPAVNLQELVHRCPAHMTGADLYA
LCSDAMTAAIKRKISLIDSGVDSEESPVLLSVEDFSAALENFRPSVSDQELLRYKNIQQK
LTVK
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaggtggagttaggcctcagggctccgggaggccgggtattttactgcgcg
ttcaccccgaccaccgaggaggagacggcgggctgcggagggagaaactcctccagagcc
gacaccgagtcccggagccgggtccggctgtacaccagccgcttcttcctgcggcaccac
gggctccagcggctcggcagctccgggaccgtgcgggctctggagccggtcagcctggac
agggtggtgctgggagcccgcagcaggcagagtctccgctgggccggagccgagcagttc
accggcgggctgctggagctctgccgcccgggacagtggctgctggcccggcagggagac
ccgctgctgctgccccgacacctgcgagaggacccgggacagcagcagctgtcggacctg
ctggtgttggagtgcagtcctgtgacgcagggaaggatcacggccgacacctctctggtt
ctcacggactgctgggactcagcagaccccccaggtgcccccccactctgcagaccgctc
agactctgtgtgtcagacttcgctcattacgccgacggcctcggaggggggcgctctctt
ctcgacaacaggaagctgctgggctctgggttctcgggcatcctgcaggcgctggagtgc
agggtggatgtccgggtggtggatgctcagcgctgggtcagggtcagaggtcagcaggga
gcggccatggacgtggacagctgcgtgttcgtgagcaaacagctgcttctcaggctggga
ctgtttaaccaggagtgggtgaagctgtccaggctgggcggatcctccagaccctcgacc
gctcagaccgacgtcagggggagcgtctgcggagagcggctggtctctgtggtggtggtg
gatttaacacagagtccagacctgcagaaccacgatgaggttggtttcatatcagcgact
ctgtggttcaacatgacggaaggagaaatgattcctgtgaacagctgcacgctgaggatg
aagaggtggaggttgtctcctccggagtccagtggtcgctctgacagttcctgtcgctcg
gcttctccaccgttcgccagtgagcttcacatccagccggttgtgtctccgctgtacaac
aacatcagctgctacgacaacctgctgtctgaacacttcgacactcccagactggtttca
cagggagatattttatcagttccagctgaaaagcatccagacctgctggagaacaactct
gagggaatccacaggtgtccagtgctgttctttagagtgcagaaggtgtgtccatctgca
gagagagaacaacaggaggaggaaggaggaggaggaggcggcgctcacctggccgacaga
gttcacacctcactctacctgggagcgtccaccaacagctccgtcccctgctgctctgtg
gagggagcgtctctgtggagcagtctgtctcctcctggcctcaacaagaccgtcgacctc
ctcagcagcatcatcctgccccacctgcaccacagcggctctctgtctggttgcactgtc
ctccttcacggtccagcaggaagtggtaagatgacggcggtgagcgcagcgagtcgcaga
ctgaacatccacctgctgaaggtggactgtgtgagtgtgtgcgctgacacccctgcagcc
tctgaggtgaagctgacgtcggtgtttcagcgagccgacgccctgcgtccctgcgtcctg
ctcctcaggaacctgcacctcctgctgagatccagaggagcggccgaggaggacgggagg
gtcggagcggcgctctgccagctgctcagcagcgcccccaccagtgtggtggtggtggcg
acggtgtgcagacctcgggatctttctgcaggtgtgatgtcggcgtttgtccaccaggtg
gcgttggagagtcctactgaggatcagcggcgctccatgttggtcagcctgagccgagac
cttcacctggggagagacgtcaacctggagagactcgctaaactcacagcgggttttgtg
ttgggggatctaagagctctgttggcggaggctggtagagctgcctgcaggaggctgatc
cacacctgtggtgatcgacaggaggaggacctgtgcgccagcggagtgactgtcctgaac
cgggacttcacctccgccctggagaccctgcaggatgcccagtccaaggccatcggcgcc
cccaagatcccgaacgtgcgatgggaggacgtcggaggtctgcagcaggtgaagaaggag
atcctggacacagttcagcttcctctgcagcgtccggagctcctgtctctgggtctgaac
cggaccggggtcctgctgtacggaccgccgggaacagggaaaaccctgctggccaaagcc
gtggccacagagtgctccatgaccttcctcagtgttaaaggtccagagctcatcaacatg
tacgtgggtcagagtgaagagaacatcagagaagtgttcagcagagcgcgctcagcagct
ccctgcgtcgtcttcttcgatgagctggactctctggctcccagcagggggcgcagtgga
gattctggaggggtgatggacagagtcgtgtctcagcttctggctgagctcgacgccctg
cactcgtccaccggggtttttgtgatcggagccacgaaccgtccggacctgctggaccaa
tcactgctgaggcccggcaggtttgataagctggtctacgtcggcatcaacgaggatcga
gtctctcagctccatgttcttcaggccattctcagaaagtttcagttggatcctgcggtg
aacctgcaggagctggtgcatcgttgtcccgctcacatgaccggcgccgacctctacgct
ctgtgttcagacgccatgacggccgccatcaagaggaagatctctctcatcgacagcggt
gtggactcggaggagtctcctgtcctcctctccgtcgaggatttctctgcagcgttagaa
aacttcaggccgtctgtttcagaccaggagctgctgcgatacaaaaacatccaacagaaa
ctcactgtgaagtag
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