Lates calcarifer (barramundi perch): 108882511
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Entry
108882511 CDS
T04895
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108882511
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcf03021
]
108882511
03036 Chromosome and associated proteins [BR:
lcf03036
]
108882511
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
108882511
Coactivators
SAGA/TFTC/STAGA complex
108882511
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
108882511
STAGA complex
108882511
TFTC complex
108882511
SAGA complex
108882511
SLIK complex
108882511
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
TFIID_NTD2
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
NBCH_WD40
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
RMC1_N
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_WDR19_1st
WD40_like
PEP5_VPS11_N
Nbas_N
PROPPIN
WD_LRWD1
Beta-prop_IP5PC_F
Beta-prop_ELP1_1st
Lysis_col
Motif
Other DBs
NCBI-GeneID:
108882511
NCBI-ProteinID:
XP_018530561
UniProt:
A0A4W6G780
LinkDB
All DBs
Position
LG5:complement(1915100..1919701)
Genome browser
AA seq
600 aa
AA seq
DB search
MKRVRTEQIQYAVAQYLKRRQYVDTDGSLKGAKLFQSAEEMAASLTVQTESGCANIVSAA
PCQSDPLQYEAQYSRLRSFLSETEISWAKEVSSILYPLFVYLHLDMVRSGLKGAVDGFYS
RFHGAFLQDGEQRATIEQLRHVLTAQDVAANPKLSAFLEHKYVVHLTEPAYSYLLRYLQS
EDNSALCRALSTHLQVEVTASRRTDYQLYGAASGATAAPNSTSSWAGVDGAEGGEGVEVP
AGIPQSEAALEALQDCIKKVREGPPSLTTVCFYAFHHTEQMLNTAEVSADSRLLAAGFDS
STVKLWSLRARKLKARPHQADVSRIHLACDVLEEEVDEEDVSGSEIKTLRGHSGPVFRTS
FLTDSSGLLSCSEDTTVRYWDLGSFTNTALYRGHAYPVWDVDVSPCSLYFASGSHDRTAR
LWTFSRTYSLRLYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGASVRLFTGHRG
PVLSLAFSPNGKYLASAGEDQRVKLWDLASGTLFKDLRGHTDSVTSLSFSPDSSLVASSS
MDNSVRVWDIRNSHGGTPADGSSSELVGLYTGNTSNVLNVQFMACNLLLVTGTAQEKAEQ
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgggttcgcactgagcagatccagtacgccgtggctcagtacctgaagaggagg
cagtatgtggacacggacgggtccctgaaaggagccaaactcttccagtcagcggaggag
atggctgccagcctcacagtgcagacagagtcgggttgtgccaacatcgtctctgctgcc
ccctgtcagtctgacccgctgcagtatgaggctcagtactcgaggctgcgctccttcctc
tcagaaacagagatatcctgggcgaaggaggtgagcagcatcctctacccgctcttcgtc
tacctccacctggacatggtgcgctctggcctgaagggggcggtggatggtttttacagt
cgtttccacggcgcctttctccaggacggcgagcagcgagccaccatcgagcagctccgc
cacgtgctcaccgctcaggatgtcgcagccaaccccaagctgagcgccttcttggagcac
aagtacgtggttcacctgacggagccggcctacagctacctgctgcgttacctgcagagc
gaggacaacagcgccctctgcagggccctcagcacgcacctgcaggtggaggtcaccgcc
tcccgacgcacagactaccagctgtacggagcagcgagcggggcaactgccgccccaaac
tccacctcctcctgggcgggagtggacggggcggagggcggggagggcgtggaggtgcct
gcggggatcccacagagcgaggcggccctggaggctctgcaggactgcatcaagaaagtc
cgcgagggccccccctcgctcaccacggtgtgtttttacgccttccaccacacggagcag
atgctgaacaccgccgaggtgtcggccgacagccggctgctggccgccggcttcgacagc
tccacggtgaagctgtggagcctccgagccagaaagctgaaggccagaccgcatcaggcc
gacgtgtcgcgcatccacctggcctgtgacgtcctggaggaggaggtggacgaggaggac
gtctccggcagcgagataaagacgctgcgaggtcacagtggccccgtgtttcgtacgtcc
ttcctgaccgacagctcgggcctgctctcctgctccgaggacaccaccgtccggtactgg
gacctgggcagcttcaccaacacggcgctgtaccggggccacgcctacccggtgtgggac
gtggacgtcagcccctgcagcctttacttcgccagcggctcccacgaccgcaccgcccgc
ctctggacgttctcccgcacctactcgctgcggctctacgccggacacctcgccgacgtc
gactgcgtcaagttccacccgaactccaactacctggccaccggctccacagacaagact
gtccggctgtggagcacccagcagggggcgtctgtccgcctgttcaccggccaccgcggc
cccgtgctgtcgctcgctttctcacctaacgggaagtacctggcgtccgccggcgaggac
cagcgggtgaagctgtgggacctggcatcagggacgttgttcaaagacttgcggggacac
acggacagcgtcaccagcctgtccttcagcccggacagcagcctggtggcgtcctcatct
atggacaactcagtccgggtgtgggacatccgcaactcccacggcgggacgccggccgac
ggctcgtccagcgaactggtgggactgtacactggaaacaccagcaacgtgctgaacgtc
cagttcatggcgtgcaacctgctgctggtgacgggaacggcacaagagaaagcagaacag
tag
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