Lates calcarifer (barramundi perch): 108882517
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Entry
108882517 CDS
T04895
Symbol
xpo1a
Name
(RefSeq) exportin-1
KO
K14290
exportin-1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03008
Ribosome biogenesis in eukaryotes
lcf03013
Nucleocytoplasmic transport
lcf03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108882517 (xpo1a)
03008 Ribosome biogenesis in eukaryotes
108882517 (xpo1a)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
108882517 (xpo1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108882517 (xpo1a)
03009 Ribosome biogenesis [BR:
lcf03009
]
108882517 (xpo1a)
03016 Transfer RNA biogenesis [BR:
lcf03016
]
108882517 (xpo1a)
03036 Chromosome and associated proteins [BR:
lcf03036
]
108882517 (xpo1a)
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
108882517 (xpo1a)
Ribosome biogenesis [BR:
lcf03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
108882517 (xpo1a)
Pre-60S particles
108882517 (xpo1a)
Transfer RNA biogenesis [BR:
lcf03016
]
Eukaryotic type
tRNA transport factors
tRNA export factors
108882517 (xpo1a)
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
108882517 (xpo1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CRM1_C
Xpo1
CRM1_repeat_2
CRM1_repeat_3
CRM1_repeat
IBN_N
TPR_TNPO3_IPO13_2nd
Gluconate_2-dh3
BspA_v
Motif
Other DBs
NCBI-GeneID:
108882517
NCBI-ProteinID:
XP_018530568
UniProt:
A0A4W6G9P0
LinkDB
All DBs
Position
LG5:complement(1804978..1818802)
Genome browser
AA seq
1066 aa
AA seq
DB search
MPAEMTMLADHPARQLLDFSQKLDINLLDNVVNSMYHDIGSQQRVAQEVLTNLKDHPDAW
TRVDTILEFSQNMKTKYYALQILEAVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPANM
EKEGVYISKLNMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMIILKLLSEEVFD
FSSGQMTQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGY
IFETKLISTLVYKFLNVPMFRNVTLKCLTEIAGVSVNQYEEQFVNLFTLTMCQLKQMLPL
NTNIRVAYANGKDDEQNFIQNLSLFLCTFLKEHGQLIEKRPNLRETLMEALHYMLLVSEV
EETEIFKICLEYWNHLAAELYRESPFSTSSTPLLSDVPPRRHLYLPVLSQVRLLMVSRMA
KPEEVLVVENDQGEVVREFMKDTDAINLYKNMRETLVYLTHLDYADTERIMTEKLHNQVN
GTEWSWRNLNMLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIM
YIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVG
EVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQAVQELLIEKYMMLPNQVW
DSIIQQATKNVDILKDAETVRQLGSILKTNVRACKAVGHPFVVQLGRIYLDMLNVYKCLS
ENISSAVQTNGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLEAVL
IDYQRNVPAAREPEVLSTMATIVNKLGVHITGEIPKIFDAVFECTLNMINKDFEEFPEHR
THFFYLLQAATSQCFPAFLSIAPAQFKLILDSIIWAFKHTMRNVADTGLQILYTLLQNVS
AEETAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHATILAYMFNLVEEGKVSVALSAA
SPANNQAHVQEYIANLLKTAFPHLQDAQVKVFVTGLFSLNQDIPAFKEHLRDFLVQIKEF
AGEDTTDLFLEEREAALRQAQEEKHKLQMSVPGILNPHELPEEMCD
NT seq
3201 nt
NT seq
+upstream
nt +downstream
nt
atgccagcagaaatgacgatgttggcggatcacccagccagacagctgctggacttcagt
cagaaactggacatcaacctgttggacaatgtggtgaactccatgtaccatgacattggg
tcccagcaacgtgtggcccaggaggtgctcaccaacctgaaggaccatccggacgcctgg
acgagggtcgacaccatcctggagttctctcagaacatgaaaactaaatattatgcactg
cagattctggaggctgtcatcaaaacacgctggaagattctcccgagaaatcagtgtgaa
ggaatcaagaagtatgttgtcgggttgatcatcaagacttcctctgatcctgcaaacatg
gagaaggagggagtgtacatctcaaagctcaacatgatcctcgtacagatcctgaagcag
gagtggcccaaacactggcccacattcatcagtgacatcgtgggagcgagtcggaccagc
gagagcctctgtcagaacaacatgatcatcctcaagctgctcagcgaggaggtctttgac
ttctccagcggccagatgacccaggtgaaggccaagcacctcaaggacagcatgtgcaac
gagttctcccagatattccagctgtgccagtttgtgatggagaactctcagaacgcccct
ctggtccacgccacactggagactctcctccgcttcctgaattggattcctttaggttac
atcttcgagaccaaactcatcagcaccctggtctacaagttcttgaacgtgcccatgttt
cgcaacgtgacgctgaaatgtctgacggagatcgccggcgtgagcgtcaaccagtacgag
gagcagtttgtcaacctgtttactctcaccatgtgccagctcaaacagatgctgcctttg
aacactaacatcagggtggcctacgccaacgggaaggacgacgagcagaacttcatccag
aacctgagcctgttcctctgcaccttcctcaaagagcacggccagctcatcgagaagagg
ccgaacctgcgagagacgctcatggaggcgctgcactacatgttgctggtgtcggaggtg
gaggagacggagatctttaagatctgtctggagtactggaaccacctggcagcagagctg
tacagggagagtcccttctccacctccagcacgccgctcctgtccgacgtccccccacgc
agacacctctacctgcccgtgctctcccaggtgcgtttgctgatggtgagccgcatggcc
aaaccagaggaggtgctggtggtggagaacgaccagggcgaggtggtcagggagttcatg
aaggacacagacgccattaacctctacaagaacatgagggagactctcgtgtatctgact
cacctggactacgctgacactgaacgcatcatgacggagaagctccacaaccaggtgaac
ggcaccgagtggtcgtggaggaacctgaacatgctctgctgggccatcggctccatcagc
ggggcgatgcacgaggaggacgagaagaggttcctggtcaccgtcatcaaggacctgctc
ggcttgtgtgaacagaagagaggtaaagacaacaaggccatcatcgcgtccaacatcatg
tacatcgtggggcagtatccccgcttcctgcgagcccactggaagttcctgaagaccgtc
gtcaacaagctgtttgagttcatgcacgagacgcacgacggcgtgcaggacatggcgtgt
gacaccttcatcaagatcgctcagaagtgccgccgccattttgtccaggtgcaggtggga
gaggtgatgcccttcatcgacgagatcctcaacaacatcaacaccatcatctgtgacctg
cagcctcagcaggtccatacgttctacgaggccgtgggctacatgatcggggctcagacg
gaccaggcggttcaggagcttctaatagagaagtacatgatgctgccgaaccaggtgtgg
gacagcatcatccagcaggccaccaagaacgtggacatcctgaaggacgcggagacggtg
cgtcagctgggcagcatcctgaagaccaacgtcagagcctgtaaagctgtcggtcatccc
ttcgtcgtccagctgggacggatctacctggacatgctcaacgtctacaagtgtctgagt
gaaaacatctcctcagctgtgcagacgaatggtgagatggtgaccaagcagcctctgatc
aggagcatgaggacggtgaagagagagactctgaagctgatctcaggctgggtcagtcgc
tccaacgaccctcagatggtggcagagaactttgtgccccccctgctggaggccgtgctc
atcgactaccagaggaacgtcccggctgctcgggagcccgaggtcctcagcaccatggca
accatcgtcaacaagctgggagtccacatcaccggggaaatccccaagatcttcgacgcc
gtcttcgagtgcactttgaacatgatcaacaaggactttgaagaattcccagaacacaga
acccatttcttctacctcctccaagccgccacctcccagtgcttcccggccttcctgtcc
atcgccccggcccagttcaaactgatcctggactccatcatctgggccttcaagcacacg
atgaggaacgtggccgacacaggtctgcagatcctctacactctgctgcagaacgtgtct
gcagaggaaacagcagctcagagcttctaccagacctacttctgtgacatcctgcagcac
atcttctctgtggtcacagacacctcccacactgcaggtctgaccatgcacgccaccatc
ctggcctacatgttcaacctggtggaggaggggaaggtcagcgtggccctgagcgccgcc
agccccgccaacaaccaggcacacgtccaggagtacatcgccaacctgctgaagacggcc
ttcccccacctgcaagacgcccaggtgaaggtgtttgtaacgggtctgttcagcctgaac
caggacatcccggccttcaaggagcacctgagggacttcctggtgcagatcaaggagttc
gccggcgaggacacgacggacctgttcctggaggagagggaggcggctctgcgccaagcc
caggaggagaaacacaagctccagatgtcggtgcccggcatcctcaacccccacgagctg
ccggaggagatgtgtgactga
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