Lates calcarifer (barramundi perch): 108882675
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Entry
108882675 CDS
T04895
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
108882675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcf03400
]
108882675
DNA repair and recombination proteins [BR:
lcf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
108882675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
Motif
Other DBs
NCBI-GeneID:
108882675
NCBI-ProteinID:
XP_018530855
UniProt:
A0AAJ7LS80
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Position
LG23:complement(13521601..13530403)
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AA seq
935 aa
AA seq
DB search
MAVQPKQNLSMDSAAEHGFLNFIFSMPEKPDTTFRIFDRNDYYTVHGKDAIFAAKEVFKT
NGVIKYLGSGSRKLESVVLSKLNFEAFVKDLLLVRQYRVEVYRNHSKSSKEHDWKIEYKA
SPGNLTQFEEILFGGGTGAEGCAGVVAVRFATGADGQRVVGVGYVDAAQRTMGVCEFPDN
EIFSNLESLLVQLGPKECLLAQGEGIADGSKLREVVERGGMLVSDRKRAEFSSKDVVQDL
NRLLRAKRGESVASNTLPELDKQVAMSCLAAVVRFLELLSDESNFNSFSLTTLDLGQYMR
LDNAAVRALNLFQGSPDDTSGAHSLAGLLNKCRTPQGQRLVNQWIKQPLMDKTKIEERLD
LVESFVCDSELRQTCQEDLLRRFPDLHRLAKKFHRHSATLQDCYRVYQAVSQIPALITAL
ERYSGSYQVLLEAVFLSPLRDLQTDFVKYQEMIETTLDMNQIDHHEFLVKASFDPVLSEL
REKMDALEKSMQAVLNSAARELGLDAGKTVKLESNAMLGFYLRVTCKDEKSLRNNKKFTT
LDVQKNGVRFTNSKLSSLNEEYTKSREEYEEAQNAIVKEIINIASGYVDPLQTLSDVIAL
MDAVASFAVASVSAPVPYVRPRLLADGCRRMELLQARHPCMETDADTAFIPNDIIFIQGE
KSFYIITGPNMGGKSTFIRQVGVIALMAQIGCFVPCEKAELSVIDSVLARVGAGDSQVKG
VSTFMSEMLETASILRSATENSLIIIDELGRGTSTYDGFGLAWAISEHVASKIGCFCLFA
THFHELTALAAQQPTVHNLHVTALTSHNTLTMLYRVKPGVCDQSFGIHVAELACFPPSVV
AMAKEKAEELEEFQEPAGEKSEQDEEPEAKRRRTDKQVGENLIQDFLEKAKSLPVATMSE
EEVKAELRRMKQELVAKNNTYITEILAHCAPVKTA
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaaccgaagcagaacctgtccatggatagtgcagctgagcatggcttccta
aacttcattttctccatgccggagaaaccggacactactttcagaatattcgaccgtaac
gactactacactgttcacgggaaagacgccatattcgcggcgaaggaagttttcaagacg
aatggggtcatcaaatacttgggctcagggagccgcaagctggagagtgtggtcctgagc
aagctgaactttgaggcctttgtcaaagacttgctgctggtgaggcagtacagagtcgaa
gtgtacaggaaccacagcaagagcagcaaggagcacgactggaagattgaatacaaggcc
tctccaggaaacttgactcaatttgaggagattctgttcggcggcggaaccggagcggag
ggctgtgcaggagttgtagccgtgcgatttgctacaggagccgacggacagcgcgtggtc
ggggtcggctacgtggacgcggcccagaggacgatgggagtgtgcgagtttccagacaac
gagatcttctccaacctggagtccctgctcgtccaactcggccccaaagagtgtctctta
gcccagggtgaaggcatcgctgacggcagtaaactacgagaggtggtggagcgtggtggc
atgctggtgtctgacaggaagagggcagagttcagcagcaaggacgtggtccaggatctc
aataggctgctgagagccaagagaggagagagcgtggccagcaacacactgcctgagctg
gacaaacaggtggctatgtcgtgcttggctgcggtggtgcgtttccttgagctgctctct
gatgaatccaactttaactccttcagtctgaccactctggacctgggtcagtacatgagg
ctggacaatgctgccgtgagggctcttaacctcttccagggttcacctgacgacaccagc
ggagctcattcattggccggtctgttgaacaagtgccgtacgccgcagggtcagcggctg
gtcaaccagtggatcaaacaaccgctcatggacaaaaccaaaatagaggagaggctggac
ctggtggagagttttgtgtgtgactcagagctcaggcagacctgtcaggaggacttgctg
cggcggtttcccgatcttcaccgcctggccaagaagttccaccgtcacagcgcgacgctg
caggactgttaccgcgtctaccaggccgtgagccagatccccgccctcatcacagcattg
gagagatactcaggcagctaccaggttctgttggaggcagtgttcctctcccctctcaga
gacctgcagactgacttcgtcaagtatcaggagatgatcgaaaccaccctggacatgaac
cagattgaccaccatgaattcctggtgaaggcgtcttttgacccagtgttgagcgagctg
agagagaagatggacgcgctggaaaagagcatgcaggcggtgctgaacagtgcagccaga
gaattaggcctggacgctggtaagactgtgaagctggagtccaacgccatgttgggtttt
tacctgagagtcacctgcaaggatgagaagagtctgaggaacaacaagaaattcaccacg
ctggatgttcagaagaacggagtgcgcttcacaaacagtaagctgagctctctgaatgag
gagtacaccaagagcagggaggagtacgaggaggcccagaacgccatcgtcaaagagatc
atcaacattgcctcaggttacgtggaccccctccagactctgagcgatgtgatagcgctg
atggacgcggtggcaagtttcgccgtggcttccgtctctgcccccgtcccgtacgtgcgg
cctcgcctcttggccgacggctgcaggcgaatggagctgctgcaggccagacatccctgc
atggagacggacgcagacaccgccttcatacccaacgacatcatcttcatccagggagag
aagagcttctatattataacaggaccgaatatgggcggcaagtcgacatttatccggcag
gtgggtgtgatcgctctgatggctcagatcggctgctttgtgccatgtgagaaggcggag
cttagtgtgatcgacagcgtcctggccagggtgggagcaggagacagccaggtgaaaggc
gtgtccacctttatgtctgaaatgctggagacggcctccattctgcgctcggccacggag
aactcgctcatcataatcgacgagctcggcagaggcacgtccacgtatgacggcttcggc
ctggcctgggccatcagtgaacacgtcgcctccaaaatcggctgcttctgcctgtttgcc
acgcacttccacgagctgacggcgctggcggcgcagcagcccactgttcacaacctgcac
gtcacagccctgacctctcacaacaccctcaccatgctgtacagagtcaaaccaggtgtg
tgtgaccagagttttggtatccacgttgccgagctggcttgtttccccccatcggtggtt
gccatggcgaaggagaaggcagaggagctggaggagttccaggaacctgcaggggagaag
tcagagcaggacgaagagcctgaggccaagagacgacggacagacaaacaagtgggggaa
aacctgatccaggacttccttgagaaagcaaaatcacttcctgttgccaccatgagtgag
gaggaggtgaaggcagagctcaggaggatgaagcaggagctggtcgccaaaaataacacg
tatatcactgagatccttgcacactgtgctcctgtgaaaactgcttga
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