Lates calcarifer (barramundi perch): 108882798
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Entry
108882798 CDS
T04895
Name
(RefSeq) SH3 domain and tetratricopeptide repeat-containing protein 2 isoform X1
KO
K24313
SH3 domain and tetratricopeptide repeat-containing protein
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108882798
Membrane trafficking [BR:
lcf04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
108882798
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_12
TPR_8
SH3_2
TPR_2
TPR_1
SH3_1
SH3_9
TPR_MalT
TPR_7
TPR_10
HEAT_Nup120
Motif
Other DBs
NCBI-GeneID:
108882798
NCBI-ProteinID:
XP_018531023
UniProt:
A0A4W6CKA8
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All DBs
Position
LG8:6865855..6885240
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AA seq
1616 aa
AA seq
DB search
MALISGSCRLLGQMASCCCRPLLNSSCCGPLIKVCLSSFTDISPAELDALWREPPYTLGG
TNEHFSGNDIMTQGAGEEEDGPVVESGEGGVEPDSYWKRKEAFFRGSTVSLGEKFSSEIV
LLFTGRRRSSVDPDRTLQEALRTRLRVVESNSQDVIQLFKDLSARLVSVHAEKDSFVLTF
KTVEEIWKFSTYLALGYVARCLENFLCDQSVWLDPELLTDLEINVSVDEEHLATLYLGLL
LQEGSFFAKALFTSEHNEDEEEHLSFKKNDLLMVKDTGQDNMWEGTMLSTGKHGLVPVNA
MQPLPYPFYQWFLRKYPGSTGCAATEKEPFEHPIVTGSCVAVVDYSPMGPDELQLSQGDI
VEIQGLLVRGLGVFIGTHTSTGHTGFIHKAHVKPLDAVPLDGQLVFLTEEERASLAQVNP
CSSEPSDGSLLERLFSSDISSVYRLDRLDETDFMYIRNRPKHDHKVSSSTRQSVMSERSG
GTPPYQSSPRASLSHSSPRLSLYRSHNPLPREGERLSFTLDDTFRELDEFQEDPPLFLEE
NSWEGEESELSDPTLTLLSHEHFQEDFLPLYDLQYSFLWVTFSGKTEEELSGHLESVREC
AKRMGMHWAHRRACFLLGRLCARKLKLSQARVYYEEALSVSVNSFSDTPLLIALFTNLTA
VYLKQRMTDKLPQTLEKASALLLCLPSHAFTSTDEVELLKLILRRSVVMGDKILEARVCY
LISSLFLLLKKTDDALPFVERLQFLSVTLSVAEGRPIVPLDLSWLLSWLYHRKYMPYLAL
ASLSLDSRQDHSLHDAFQRIELFIRNSVRLNPCWKEGTSLLPAQIVVYLQQALAIAEQGE
DMKTQRDLCLGLASVYQQYNALDNAVRCAQQAVETGGHINEEEGFEASVLLGWLLVLTGQ
AERAQTVLQPLLTSLQGTDSPTQRGVIHNLLALCLRRQGRVPEAGWHLHSALVISRESGN
QRNQALALANLGCLALDVEASWVAERFLVRSLQLFMELWESPTDEEHVQTYLWLGRSYKD
RGRSQDIRACYEMGLLIALHARNLHSQMVVAKVLSRLYADMLLYGQSIVYYEHCVSVSRE
LKDKRLEGEYLEILSSLYLSLNTEKSSRKSLDYTKQSLRISIDLGKREEESETWLQVGRI
YYLIQEDELADMYLQAAVKTALRMNDPHFAMCIYEEAGDVYFKGHRNRMASLPFFRDGSL
PFARSIKDIHSEFRLLSKLTELLMNQGEQEEALQYATLAVQVASKTAVRMNERTAYHRLA
TVYYSLQQYEMAENYYLKSLSLCPPVLQHPREARYYAKVYCRLGNITLHKLKDAFDAVGY
FQLALAAALEDQTNPEALYVVYMKLAEIHGNHMPDAQLCQVYRDRAQSLKRVLAGEEGTA
AGEENTDYADTEPGQEREKDSDADMGQTESLLRRNGIFDSIPEDEKYEDDSSPRTCMTHI
DTEGRCIDTSLGDAHGKEGHNHHLPDTDGANVDGSETDTIASQSYSDSIFTESFDTAKEQ
ISDSSSSTDTLQTYHNPIDGEDFDTDHSMPSQIPAKHAGDITGHAGDTDSDIQDEQNTPT
TETEGHADPIEKDVSLEGSQPDTDHAETVINPDKAVSMDKSCDYTDKDKSETGDNL
NT seq
4851 nt
NT seq
+upstream
nt +downstream
nt
atggcattgatctctgggagctgccggctcttgggccagatggcgtcttgttgctgcaga
ccgctgctcaactcttcctgctgtggaccgctcatcaaagtctgcctctcctccttcaca
gacatctctcctgcggagctggatgctctttggagggaaccaccgtatactcttggggga
acaaatgaacacttctcaggaaatgacatcatgactcaaggcgcaggtgaggaggaggac
ggtccagtggtggaatcaggtgaaggtggggtggagcctgacagctactggaagaggaag
gaagcgttcttcagaggaagcacagtgtcactgggagagaaattctcctcagaaattgtg
ctgttattcactgggcggaggcgctccagtgtggatcctgaccgaaccctgcaagaggca
ctgcgcacacgactgcgagtagtggagagcaacagccaggacgtcatccagctctttaaa
gacttgtctgcacgtctggtgtctgtccacgctgagaaggatagctttgtactcacattc
aagactgtggaggaaatctggaagttttcaacttacttagcattgggctatgtggctcgc
tgcttggagaacttcctgtgtgatcagtcagtctggctggacccagagctgctcactgat
ttggagatcaatgtgagtgtggatgaggaacatctggccaccctctacctgggacttcta
ctccaggaaggatccttctttgcaaaggcgctatttacaagtgagcacaatgaggacgag
gaggaacatctgtcattcaaaaagaacgacttgctgatggtgaaggacacggggcaggac
aacatgtgggagggcaccatgctgtccacaggaaaacacggcctggtgccagtcaatgcc
atgcagccactgccctaccccttctatcagtggttcctgaggaagtaccccggcagtact
ggatgcgcagcaacagaaaaggaaccatttgaacatccaattgtcacgggttcctgtgta
gcagtggttgactacagtccaatggggccagatgagctccagctgagccaaggtgacatt
gtggagatccagggtctgctagtccgaggcctgggcgtgttcataggaacacacacatcc
acaggacacaccggttttatacacaaggcccacgtcaaacctctggacgctgtgccccta
gacggacaattggtctttctgactgaggaggagcgggccagcctggctcaggtcaaccca
tgtagttctgagccaagtgacggcagcctgctggaaagactcttctcatctgatatcagc
tctgtgtacaggctagacagactggatgagactgacttcatgtacatcaggaatcgacca
aaacatgatcataaggtttcttcgagcacacgtcagagtgtcatgtcagagaggagtgga
gggacacccccgtaccagtcctccccacgcgcctctctctctcattcctctccccgtctg
tccctctatcgctcccacaatcctctgccgcgtgagggagaacgcctgtccttcactctg
gatgacacattcagagagctggacgagttccaggaagatccaccgcttttcttggaggag
aacagctgggagggggaggagtccgagctcagtgaccccacgctgaccctgctcagccat
gaacacttccaggaggacttcctgcccctgtacgacctgcagtattccttcctgtgggtg
accttcagtgggaagactgaggaggagctctcggggcaccttgagagtgttagagagtgt
gccaagaggatgggcatgcactgggcacatcgacgggcgtgctttctcctgggtagactc
tgtgctaggaagctaaagctctcccaggcgcgggtgtactatgaggaggccctgagtgtt
agtgtgaacagtttctctgacacccctctcctcatcgctcttttcacaaacctcaccgct
gtctatttgaagcagcgcatgacagacaaactgccccagaccctggagaaggccagcgct
ctgctcctctgtctccccagccatgccttcacctccacggacgaggtcgaactgctgaag
ctgatcctgaggaggtcggtggtgatgggggacaaaatcctggaggctcgcgtctgctac
ctcatctccagcctcttcctgctactaaagaagacagatgatgctcttccctttgtagag
cgactccagtttctctcagtgacgctctctgttgccgaggggagacccatagttcctttg
gacctcagctggctcttgagctggctctatcatcgtaaatacatgccttacttggcactg
gcctctctgagcctggactcaagacaagaccactccctccacgacgccttccagaggatt
gagctatttatcaggaactctgttcgcctgaacccgtgctggaaggaaggaacctccctg
ctccctgcccagatcgtggtttaccttcagcaagccctggctatagctgagcaaggggag
gacatgaagacccaaagggacctatgtttgggattggcctcggtgtaccagcagtacaat
gctctagacaacgcagtgcgctgcgctcaacaagcagtggagacgggcggtcacatcaat
gaggaggagggctttgaggcctctgtgctgctggggtggctgctagtgttgacaggacag
gctgagagggcccagaccgtcctgcagccactgctcacgtcacttcagggtacagacagt
cccacacagcgaggagtgatccacaacctcctggctttgtgtctgaggcgacagggccga
gtcccagaggcaggttggcatctccactcagccttggtgatctccagggagagtggtaat
cagaggaaccaggccctggcgctggccaacctgggctgcctggcactggatgtggaggca
tcttgggtagcagaacgcttccttgtcagatcgctacaactttttatggaactctgggag
agccccacagacgaggagcacgttcagacctacctttggctggggcggagctacaaagac
agggggaggagtcaggatatcagagcatgttacgaaatgggtttactgattgcactacat
gccagaaacttgcacagtcagatggtggtggctaaggtgctgagtcggctttatgctgac
atgctgctttatggtcagagtatagtctactatgagcactgtgtgtcagtatccagagag
cttaaggacaagagactggagggggagtacctggaaatcctcagcagcctctacctctca
ctcaacactgagaaatcatctcggaagtctctggactacaccaagcagagcctgaggatt
tctattgatttgggaaagagagaggaagagtcagagacctggctacaggttgggcgcatt
tattacctcatccaggaggacgagctggctgacatgtacctgcaggcagcagtgaagaca
gccctgaggatgaatgaccctcactttgccatgtgcatctacgaggaagcaggagacgtc
tactttaaaggtcacagaaaccgcatggcttcactgcctttcttcagggatggcagtctg
ccatttgcacgcagcatcaaggacatccactcagagtttcgtttgttgagtaaattgaca
gagctgttgatgaaccagggagaacaggaggaggctctgcagtacgctacattggctgtt
caggtcgccagcaaaacagctgtgcgtatgaatgagaggacagcctaccaccggctggct
acagtttactacagcctgcagcagtacgagatggcggaaaactactacctcaagtccctg
tccctctgccccccggtcctgcagcaccctagggaggctcgctactacgctaaggtctac
tgcagactgggaaatatcaccttacacaaactgaaggatgcctttgatgcagtgggctac
ttccagttggctctggctgcagccctggaggaccagactaaccctgaggctctgtacgtg
gtgtacatgaagctggcagagatccatggcaaccacatgcccgacgctcagctttgccaa
gtttacagagacagagcccagagtctgaagagagtcctggctggtgaggaaggcactgct
gctggagaggaaaacactgactatgcagacacagagcctggccaagaaagggagaaggac
tcggatgcagatatgggacaaacagaaagtttgttgaggagaaacggcatcttcgattct
atacctgaagatgaaaagtatgaagatgactcatctccaagaacttgcatgacccatata
gacacagagggtagatgtatagacactagtcttggagatgctcatgggaaagaaggtcac
aatcaccatcttcctgatacagatggcgccaatgtggatgggtctgagacggacaccatc
gctagccagtcatacagtgatagtattttcactgagtcctttgatacagcgaaggagcag
atctcagactccagcagctccactgacactttgcaaacttaccacaatccaatagatggg
gaagactttgacactgaccacagcatgcccagtcaaatacctgctaaacacgcaggtgac
atcacaggacacgccggagacactgattctgacattcaggatgaacaaaacacccccact
acagaaacagaaggtcatgcagatcctattgaaaaggatgtcagtctggagggcagtcag
cctgatactgaccacgcagagactgttataaatccagataaggctgtaagcatggacaag
tcttgtgactacacagataaagataaatctgaaactggtgacaacttgtag
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integrated database retrieval system
