Lates calcarifer (barramundi perch): 108882920
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Entry
108882920 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: transcriptional regulator ATRX
KO
K10779
transcriptional regulator ATRX
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
108882920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108882920
03036 Chromosome and associated proteins [BR:
lcf03036
]
108882920
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
108882920
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
108882920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
ADD_ATRX
Helicase_C
Motif
Other DBs
NCBI-GeneID:
108882920
NCBI-ProteinID:
XP_018531227
UniProt:
A0AAJ7LV26
LinkDB
All DBs
Position
LG8:complement(9273759..9304140)
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AA seq
2065 aa
AA seq
DB search
MSLASSESNLDQMAEKAEEPGSSTDNMKPSSSRNKRKSSTAAKHTGLNESDASAESENEG
ATSDNPSDTNTGSASKGTLVMRPAGNENKGAMKLRVDFKQKHTDDTLQKKVSCTACGKQV
NQFQRNSVYEHPALKVLICKSCYKYYTSDDISRDSDGMDEQCRWCAEGGKLICCDYCNNA
FCKKCILRNLGRKELSVITDENSKWHCYVCRSEPLQDLVSKCHRIMEKQELEQLKQRKPD
KTEERESKRHKSKVVKEHKAVVNGKEHMEGSGTMTFSYKKLQVPKELIKKAKKLVETTTG
LNNTFIQFIQQETKEQGDKAIRNRHLKAFKAVLTDLKKAHSALEAALEPEFRSMELQNGN
EGWPIVRRTPAIVAPVEKDHIDTAADAAGAAVADAADVAAVDAADAADAADAAGAVDVAD
ALDEVNAVDEADAADKLNKEQHNEQEVDNDQVLIETEMKDNQTETDVTKKTIKSEVCDDD
LVSTGEMSLDHDIMSVPPSVPEELFQMVESLADSTMLSQTDTVLATDTDARSNGNSTESP
RPQPKVKNLIVKLTPVPVVTTCGSRSFRHKNREKDGETQKKPKEEKCEDEKDAAADTVDG
ADSPPPSRRSSRVKTTPLRKQAENKGKEESSESESEEDSKGKAKSSKKSSNAKIEEGKQS
KASEKKTSDSDSDEVPHALLEKAAENHSTDEEQGSRSAKKRLFKLNNTSAQETDKASKRK
RKSESSDSDVQNKSKKTSKKKKQNSSDSSNSDSDQEKEKKSKASPAKRRSSRVKKQGEAK
EEDDKKSPERKAAERKRSYEKKRKGRSSVAASRLQSSSSEEEEEEQQEAEDGSGEDSDEQ
KIKPIVEDNIMGGSGPFHQSSGDEVDDKEEVSRVCEDDDDDDPENRIAKKMLLAQIKSNY
SSGAESSSDNEGADKDEKSSNKGKKEDDDEEEEEQQDDSEDSGSDVEVKKRGRRHKLLRH
KLSLSEGESGEENTSSKEKNKGDKKKSSRQVDSDDSADSDFEKSESSAESGISEEVSESE
NDGKRRKTRAAKKKDEEQQRSYKQKKKRRRIKVQDSSSSNEKSGEEDGEDQDGEGRKGRK
KIRKILKDDKLRTETRDALKEEEERRKRIAEREALREKLREVIVVEESSQVACPITTKLV
LDEDEETKEPLLQVHRNLVTKLKPHQVDGVQFMWDCCCESVKKIEKSAGSGCILAHCMGL
GKTLQVVTFLHTLLLCEKLSFTTALVVCPLNTVLNWLNEFEKWQEGMKDEESLEVTELAT
VKRPQERAYALQRWHETGGVMIIGYEMYRNLTQGRNIKSKKLKETFKKTLVDPGPDLVIC
DEGHILKNEASAVSKAMNSIKTRRRIVLTGTPLQNNLVEYHCMVNFIKENLLGSIKEFRN
RFINPIQNGQCADSTPHDVRIMKKRAHILYEMLAGCVQRKDYTALTKFLPPKHEYVLSVR
VTPLQCKLYRYYLEHFTGLGNALEGGRGRSGTKLFQDFQMLSRIWTHPWCLQLDYISKEN
RGFFDEDSMEEFIASETEESSMSLTSEDEKMKKKKKQGKGKKKGSDDSDSDDVEVIKEWN
TSSRGRNGEGRNRAESVDEPRPSGSAPGSPTADWHKEFVTEADAEILEHSGKMVLLFDIL
RMAEEVDDKVLVFSQSLISLDLIEDFLELACRAKDEDKVSPYKGEGKWFRNIDYYRLDGS
TNATTRKKWAEEFNDTSNVRGRLFLISTRAGSLGINLVAANRVIIFDASWNPSYDVQSIF
RVYRFGQVKTVYVYRFLAQGTMEEKIYERQVTKQSLSFRVVDQQQIERHFTMNELAELYT
FDPDTLDDPSEKKSKKATPMLPKDPFLAEMLQNNKDQIVCYHEHDSLLDHKEEEALSEED
RKAAWAEYEAEKKGLSMRTNYQTSYSQMDIGTSSYFSYNVAALASMSNQQLEDLINQGRQ
KVIEATNALKTLSRETLEDTIARVWKENPSLTENQVQSMALGRQASVELEIKRREAIYRD
VLTRQQTLMMFVQKLITNRKVQEQQLAMANQASYLNQLALQNGMMGGVSQMGGVSQMDLL
GLYQQLHGLGNPQGMGKNPGPSKGL
NT seq
6198 nt
NT seq
+upstream
nt +downstream
nt
atgagtctggcttcttctgaatcaaacctagaccaaatggcagaaaaagcagaggagcct
ggaagctcaacagacaatatgaaaccctcctcttcccgcaacaagaggaagtcctctaca
gcagctaagcacactggactgaatgaatctgacgcctcagccgagagtgaaaatgaaggt
gccacttctgacaatccctcagacactaacacaggtagcgcatctaaaggcactttagtg
atgaggccagctgggaatgaaaataaaggtgccatgaagctcagagtggatttcaaacag
aaacacacagatgataccctgcagaagaaggtaagctgcactgcctgtggaaaacaagtg
aaccagtttcagcgcaactctgtgtacgagcatcctgcactcaaagtacttatttgcaag
tcgtgctacaagtattacacaagtgatgacatcagcagagactctgatgggatggatgag
cagtgcaggtggtgtgctgaaggaggcaaactcatctgctgtgactactgcaacaacgcc
ttctgcaagaagtgcattctgcgcaacctgggcaggaaggagctgtcggtcatcacggac
gagaactcaaagtggcactgctacgtctgcaggtcggagcccctccaggatctggtctcc
aaatgccaccgtatcatggagaaacaagaacttgagcaactcaagcaacggaaaccggat
aaaacagaggaacgtgagagcaagagacacaagagcaaagtggtcaaagagcacaaagca
gttgtcaatggaaaagaacacatggaaggctcagggaccatgacgttttcatacaaaaaa
ctgcaggtacccaaagaactcataaagaaagcaaaaaagcttgttgaaaccacaactggt
ctcaacaacacattcatccagttcatacagcaggagaccaaggagcagggagataaagct
atcagaaatcggcatttgaaagctttcaaggccgtgctcaccgatttgaagaaagcccac
agtgctttggaggcggctctggagcctgagttcagaagcatggagttgcagaacggtaac
gaagggtggcctattgtgagaagaacccctgccattgtggcccctgtagaaaaagaccac
atagacactgcggcggatgcagctggtgcagctgtagcggatgcggcagatgtagctgca
gtggatgcggcagatgcggcagatgcagctgatgcggcgggagcagttgatgtagctgat
gcacttgatgaagttaacgcagttgacgaggctgacgcagctgacaagctgaacaaggag
cagcataatgagcaggaggtggacaatgatcaagttttaattgagactgaaatgaaagac
aaccaaacagaaactgatgtaaccaaaaagacaattaaatctgaagtctgtgacgatgac
ctagtgtcaactggcgaaatgtctttagatcacgacatcatgtctgtgccaccctcagtt
cccgaggagctttttcagatggtggagagtcttgccgactccaccatgctctcacagact
gacacagttttggctacagacactgatgcgaggtcaaacggaaactcaacagaatcccca
cgcccccagcccaaggtgaagaacctcatagtcaaactgactcccgtgccggtggtgacg
acgtgcgggtcaagatccttcaggcacaaaaacagagaaaaagatggagagacgcagaaa
aagcctaaagaagaaaaatgcgaggacgagaaagatgcggctgcagatacagtggatggg
gctgacagcccaccacccagccgccgctcaagtagagtgaagaccacccccttgaggaag
caggcagagaataagggcaaggaagagtcgtctgagtcagagtccgaggaggacagcaag
ggcaaggccaaatcatcgaagaaatccagtaacgccaaaatagaggagggcaagcaaagc
aaggcttcagagaagaagacctcggactctgactcggacgaagttcctcacgcactgcta
gaaaaagcagccgagaaccacagcacagatgaggagcagggaagcaggagtgctaaaaag
cggttattcaaactaaacaacacatctgcacaagagacagacaaagcatccaaacgtaaa
aggaagtctgaaagctctgattcagacgtgcagaacaaaagtaaaaagacttccaagaag
aagaaacaaaacagctcagactcctccaactctgactcagaccaggagaaggagaagaag
agtaaagcgagcccagctaagaggagatctagccgtgtgaagaaacaaggtgaagcaaaa
gaagaagatgacaaaaaatcaccggagaggaaggcggcggagcggaaaaggtcttatgaa
aagaagcgaaagggaagaagctccgttgcagcttccaggttacagtcgtcctccagcgag
gaagaggaggaggagcaacaagaggccgaagatggctccggagaggacagtgacgagcaa
aaaatcaaacccatcgtggaggataacattatgggaggcagtggaccgttccatcagtcc
tcaggagatgaagtggacgataaagaggaagtctctcgggtttgtgaagatgatgacgat
gatgatcctgaaaacaggattgcaaagaaaatgcttctcgcccaaataaaatccaactat
tcttcgggagcagagagctcctctgataatgaaggagcagataaagacgagaagtcctcc
aacaaaggtaaaaaagaggatgacgatgaagaggaagaagagcagcaagatgattcagaa
gattcaggttccgatgtcgaagtgaagaagcgtggccgacgccacaaactgcttcgtcat
aaactctctttgagtgagggtgaatcaggagaggagaacacgtccagtaaagagaagaac
aagggggacaagaagaagtccagtcgccaagtggacagcgatgactctgcagactcagac
tttgagaagtcagagtccagtgcagagtcggggataagcgaggaggttagtgaatccgaa
aatgacgggaagcgtcgaaagacgagagctgcgaagaaaaaggatgaggagcaacagaga
agttacaagcagaagaagaagcgacgcaggattaaagttcaggattcctcttccagcaat
gagaagagtggagaggaagatggcgaggatcaagatggagagggacgcaaagggcgcaaa
aagatccgcaaaatcctgaaggacgacaagctgcggacggagacgagagacgctctgaaa
gaggaggaggagaggaggaaacgtatagctgagagggaggcactcagggagaaacttcga
gaggtgatcgtggtggaggagtcttcacaggtggcatgtcccatcaccaccaagctggtg
ctggatgaggacgaagagaccaaggagccgctgctgcaggtgcacaggaacctcgtcacg
aagctcaaacctcaccaggttgacggggtgcagttcatgtgggactgctgctgtgaatct
gtgaagaaaatcgagaaatctgccggctccggctgtatcctcgcccactgtatgggcctg
ggaaaaactctgcaggtggtgacattccttcacactttgctgctttgtgagaagctcagt
ttcactactgcgttggtggtttgtcccctgaacaccgtcctgaattggctcaacgagttt
gagaagtggcaagaaggaatgaaggatgaggagagtttagaggtgactgagctggctaca
gtaaagaggcctcaagagcgagcgtacgccctccagcgatggcatgagacaggcggcgtt
atgatcatcggctatgagatgtaccgaaatctgacgcagggcaggaacatcaagagcaag
aagctcaaagaaacctttaagaagacactggtagatccaggtccagacttggtgatctgc
gatgaaggtcacatcctgaagaacgaggcgtctgctgtgtccaaagcgatgaactctatc
aagacgaggaggaggattgtgctgactggaacacctctgcaaaacaaccttgttgaatac
cactgcatggtgaacttcattaaggaaaacctgcttgggtcaatcaaggagttcaggaac
cgcttcattaaccccatccagaacggtcagtgtgccgactccacgccgcacgatgtccgg
atcatgaagaagagggctcacatcctctatgagatgctggctggctgtgtccagaggaag
gattacacagcactcaccaagttcctgcctccaaaacatgaatatgtgttgtccgttaga
gtgactccactccagtgtaaactctacagatactacctggagcacttcacaggtttgggg
aatgctttggaggggggccgaggccgttcggggaccaaactctttcaggatttccagatg
ctcagcagaatctggacccatccctggtgccttcagctggactacatcagtaaagaaaac
aggggtttcttcgatgaggacagcatggaggagttcatcgcctccgaaacggaagaatcc
tcgatgagcctgacctccgaggacgagaagatgaaaaagaaaaagaagcaagggaagggg
aaaaagaagggatctgatgactcggacagtgatgatgtggaggtcatcaaggagtggaac
accagctctcggggcagaaacggagagggcaggaacagagcagagtctgtcgatgaacct
cggccctctggctcagcaccagggagtcccactgctgactggcacaaggagtttgtcacc
gaagccgacgctgagatcctggagcactctgggaagatggtgctcctctttgatatcctg
cgcatggcagaggaagtggacgacaaagtgttggtgttcagtcagtctctcatctctctg
gacctgattgaggatttccttgagctggcttgcagagctaaagatgaggacaaagtctct
ccgtacaaaggtgaaggcaagtggttcagaaacattgactactatcgcctggatggctcc
accaacgccactaccagaaagaagtgggctgaggagtttaacgacaccagtaacgtaaga
ggtcgtttgttcctcatctcaacgcgagccggctcccttggcatcaacctggtggcagcc
aacagggtcatcatcttcgatgcctcctggaacccctcctacgacgtccagagtatcttc
agagtgtaccgctttgggcaggttaagaccgtctatgtctacaggttccttgctcagggc
actatggaggagaagatttatgagcggcaggtaaccaaacagtcattgtcattccgagtg
gtggaccagcagcagattgagaggcactttacgatgaacgagctcgccgagctctacacc
tttgatccagacacgctggacgacccctcagagaagaaaagcaagaaagccacacccatg
ctccctaaggaccccttcctggctgagatgctgcagaacaataaggaccagattgtgtgt
taccacgaacacgactccctgctggaccacaaggaggaggaagccctgagcgaggaggat
cgtaaggctgcctgggccgagtatgaggcagagaaaaagggtctgtccatgaggaccaac
taccagacatcatactcccagatggacattggcacctccagctacttctcctacaacgtg
gcggctttggcctccatgtccaaccagcagctggaggaccttataaaccagggacgacaa
aaagtcattgaagcaacaaatgcgttgaagactttatcacgggagacactggaggacact
atcgccagagtgtggaaggagaacccgtcgctcacagagaatcaggtccagtctatggct
ctgggacgacaggccagcgtggagctggagatcaagcgcagggaagccatttacagggac
gtcctcaccaggcagcagacactgatgatgtttgtgcagaagctgatcaccaacaggaag
gtgcaggagcagcagctggccatggctaaccaagccagctacctgaaccagctggccctg
cagaacggcatgatgggaggtgtcagccagatgggaggggtcagccagatggacctgctg
gggctttaccagcagcttcacggcctgggcaaccctcaaggcatgggcaaaaatcctggg
ccctccaagggcctgtag
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integrated database retrieval system
