Lates calcarifer (barramundi perch): 108883023
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Entry
108883023 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: sorting nexin-1a
KO
K17917
sorting nexin-1/2
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
108883023
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108883023
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
lcf04990
]
108883023
Membrane trafficking [BR:
lcf04131
]
Endocytosis
Macropinocytosis
Sorting nexins
108883023
Domain-containing proteins not elsewhere classified [BR:
lcf04990
]
Phox homology (PX) domain-containing proteins
Sorting nexins
108883023
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps5
PX
Sorting_nexin
Phage_T7_Gp13
Motif
Other DBs
NCBI-GeneID:
108883023
NCBI-ProteinID:
XP_018531393
UniProt:
A0AAJ7LT11
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All DBs
Position
LG10:5517770..5532415
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AA seq
814 aa
AA seq
DB search
MATSSERSPPPFPDSEDQDVLDTEEVRGRDSDEDDGDDLFMSVSSPPLTDMDTTLPPASQ
SSDVLMKPPTDIMNDPLIEPISSQTENKPAREVVSEPSDEFVDLTNNIIEAAADSVAAAA
KDTTEISLDEPSDDFVDILGSETEAPREDVVTAAVTAEAATDKSEVTGSVTDPPSDRKQE
VTETSTTPIIDLSGDSSASNTQQPPGSDKIVDPLGDLLGDAPFAAPLAAPLAVPLAVPLA
APPATDAKKPSRATDLFEDEGSDLFAESRQTKPAKQPQKSLFGEPDEDLFGEPLGATSKK
TINKEQKDKSVTTKAAAAAAGDVINVAGPLQESNPAEPADIFTEEAVATVPSISNTSTVN
SKTNGLHSEEETDIFAEATVELSLDSPRNERKKEVQAKPSASAPTLSAAASLAKPQSAAL
EELEEEEEEEQEDKFDIFVSVKDPEKIGDGMNAYMAYKVTTQTTLPMFRNKTFTVRRRFS
DFLGLYEKLSEKHGPNGFIVPPPPEKSILGMTKVKVGKEDSSSADFVERRRGALERYLQR
VVNHPSLLQDPDVREFLEREELPRAVSTQALSGAGFLKMINKATDAVSKMTIKMNESDVW
FEEKLQEVESADQQFRKLHALVESLVVHRKELSLNTASFAKSAAMLGSAEDNTALSRALS
QLAEVEDKMEQLHQDQAANDTFSFAELIADFIRLLGAVRGSFDHRMKAWQRWQDAQAMLQ
KKRETEAKLLWANKPDKLQLAKEEIAEWEAKVTQYERDFERVSATVRKEVVRFEKEKAKN
FRRQIIKYLESLLQSQQQLIKYWEAFLPEAKAIA
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccagctcggagcgcagtcctcctccgttccccgactccgaggaccaagatgtg
ctggacaccgaagaagtcagaggccgagacagtgatgaagacgacggggacgacctcttc
atgagcgtaagtagccctccactgaccgacatggacaccacgctgccacctgccagtcaa
tccagtgatgttttaatgaagcctcccactgacatcatgaacgatccattaattgagccc
atcagcagccaaacagaaaacaaaccagcgagagaagttgtcagtgaaccctcagatgaa
tttgttgacctaacaaacaacataatcgaagcagcagccgacagcgtcgcagctgcagca
aaagacacaactgaaatctctttggatgaaccttcagatgattttgttgacatattggga
agtgaaactgaggcaccacgagaggatgtggtgacagcggctgttactgctgaagcagca
acggacaaaagtgaagtgacgggcagcgttacagatccacctagcgacaggaaacaggaa
gtaacagaaacttctactactccaattatcgacctcagtggtgattcctcagccagtaac
acacagcagccacctggctctgacaaaattgttgaccctctgggtgacctcctgggtgat
gctccattcgctgctcctctcgctgctccacttgctgttccacttgctgttccacttgct
gctccacctgccactgatgccaaaaaacccagcagggcaacagacctgttcgaggatgag
ggaagcgacttgtttgcagaatcacggcagactaaacctgccaagcagccacagaaaagc
ctctttggtgaacctgacgaggatttgttcggtgaaccactgggtgccacctcaaagaaa
accatcaataaagagcagaaggacaaatctgtcacaaccaaagctgctgctgctgctgcc
ggtgatgttatcaacgtagctggacctctgcaagagagtaatcctgcagaacctgctgac
atcttcactgaagaagctgtcgccacagtgcccagcatcagcaacaccagcactgtcaac
tctaagaccaatggactccactctgaggaggagacggacatctttgctgaagccacagtg
gagctttctctcgacagtccacggaacgagagaaagaaggaggtgcaagccaaaccgtct
gcgtctgcccccacactgtcagcagctgccagcctggccaagccacagtctgctgccctt
gaggagttggaagaagaagaagaagaggagcaggaagacaaatttgacatctttgtctct
gtcaaagaccctgaaaaaataggggacgggatgaacgcttacatggcctataaagtaacc
acacagaccacactacccatgttccgcaacaagacattcacagtcaggcgacgcttcagc
gacttcctcggcctctatgagaagctttctgaaaaacatggaccaaatggattcattgta
cctcccccgccagagaagagcatcctgggtatgacaaaggtgaaggtaggaaaggaagat
tcctcatctgcagactttgttgagagaagaagaggtgctttggagaggtatctccagagg
gtggttaatcatccatcgcttcttcaagatccagacgtcagagagttcctggagagagaa
gagttacccagagcagtgagcacccaggctctgagtggcgccggtttcctgaaaatgatt
aacaaagcaacagatgctgtcagtaaaatgaccatcaagatgaatgagtcagatgtgtgg
tttgaggagaagctgcaggaggtggagtctgcagaccagcagttcaggaagctccacgcc
ctggttgaatcccttgttgtccacaggaaagagctgtcgttgaacacggcgagctttgcc
aagagcgcagccatgctgggcagtgcggaggacaacaccgctctgtctcgagctctctcc
cagctggcagaggtggaggataagatggagcagttgcaccaggaccaggctgcaaacgac
accttcagcttcgctgagctcatcgctgatttcatccgcctgcttggagccgtgaggggg
tcgtttgatcaccggatgaaggcgtggcagcgttggcaggacgctcaggccatgctgcag
aagaagagggagactgaggccaaactgctgtgggccaacaagccagacaaactgcagctg
gccaaggaggagatcgctgagtgggaggccaaagtgacgcagtatgagagagactttgaa
agagtatctgccaccgtccgcaaggaggtcgttcgcttcgagaaagaaaaagcaaagaat
ttcagaagacagataataaagtacttggagtctctgcttcagtctcagcaacagctgata
aagtattgggaggctttcttaccagaagcaaaagcaatcgcctaa
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