Lates calcarifer (barramundi perch): 108883028
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Entry
108883028 CDS
T04895
Symbol
sin3aa
Name
(RefSeq) LOW QUALITY PROTEIN: SIN3 transcription regulator family member Aa
KO
K11644
paired amphipathic helix protein Sin3a
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
108883028 (sin3aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lcf03036
]
108883028 (sin3aa)
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
108883028 (sin3aa)
REST complex
108883028 (sin3aa)
Heterochromatin formation proteins
Other heterochromatin formation proteins
108883028 (sin3aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sin3a_C
PAH
Sin3_corepress
Motif
Other DBs
NCBI-GeneID:
108883028
NCBI-ProteinID:
XP_018531402
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All DBs
Position
LG10:complement(5593168..5611782)
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AA seq
1273 aa
AA seq
DB search
MKRRLEDQETVFASQQRRLAGNAEAFPPRVLAPALAPAVYEAVSDNMQPTAGVQYSVPQG
YQVPTVAQNSGGHGHTPSPAVHGGSHHHNPAVQSHGPSVMSGHGHTAAPQGSAQGQQQFQ
RLKVEDALSYLDQVKLQFGNQPQVYNDFLDIMKEFKSQSIDTPGVISRVSQLFKGHPDLI
MGFNTFLPPGYKIEVQTNDLVNVTTPGQIHHITPHGISVQNIPITGAATQHQAQLPSAAT
TTAPPLLTQPTPAKMSKPLQPQALTPSSQSNPSIPAYTSPRSPPIQLHQPLSGTPTGPPM
QNNQPVEFNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQ
EVYAQVARLFKNQEDLLSEFGQFLPDANSSVLLNKTTAEKAESVRNDHGGTAKKLQLNNK
QRPNQNGCQIRRHPTPGTTPPVKKKPKLLNLKDSSVAEASKHGVGTESLFFEKVRKALRS
AEAYDNFLRCLVIFNQEVISRAELVQLVLPFLGKFPELFNWFKNFLGYREMSHIETYPKE
RATEGIAMEIDYASCKRLGSSYRALPKSYQQPKCTGRTPLCKEVLNDTWVSFPSWSEDST
FVSSKKTQYEEHIYRCEDERFELDVVLETNLATIRVLETVQRKLSRMSAEEQAKFRLDST
LGGSSEVVHRKAIQRIYGDKAPDIIDGLKKNPAVSVPIVLKRLKTKEEEWREAQRGFNKI
WREQNEKYYLKSLDHQGINFKQNDTKVLRSKSLLNEIESIYDERQEQASEENATPPTGPH
LTLTYEDSQILEDAAALIIHHVKRQTSIQKEDKYKIKQIIYHFIPDMLFSQRGELSDVEE
EEEEEEMDLEEGASKKHNGVPSSGSPSKSKLLFSNTAAQKLRGCDDAYNLFYVNNNWYIF
LRLHQTLCSRLLRLYGQAERQIEEEVRERDWEREVLGLKKEKNDNPAIQLRLKEPMDIEV
EDYYSAFLEMVRNLLDGNMEASQYEDSLREMFTIHAYIAFTMDKLIQSIVRQLQHIVSDE
ICVQVTDLYLTESANGASGGTMSTQSSRSSAESIYQRKAEQLMSDENCFKVMFLRNRGQV
QLTVELLDTEEENSDEPMEAERWSDYVGRYLNPDSTTPELREHLAQKPVFLPRNLRRIRK
YQKGREQLDKEACEGGKKSLEKEKMECMFKLNSYKMVYVFKSEDYMYRRTALLRAHQSHE
RVSTRLHKRFQAWVEAWSKEHVTRDMSAETNKWLMGEGRDGLLPCTTTRQPEVLHFMNIN
KYRVKYGTPSKAP
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggcgactggaggatcaggaaacggtttttgcgtcccagcagcggcgccttgct
ggcaacgcggaggctttcccgcctcgtgtcctcgcccctgctctagccccagctgtgtac
gaggccgtgtctgacaacatgcagcccacagcaggcgtccagtactccgtcccccaggga
taccaggttcccaccgtggcccagaacagtggcgggcacgggcacaccccgagcccagcc
gtccacggggggtcccaccaccacaacccagcagtccagtcccatgggccctcagtgatg
tcaggacacggccatacagctgctcctcaaggctcagcgcagggccagcagcagtttcag
aggctcaaggtggaagatgctttgtcttacttggaccaagtgaaactgcagtttggcaac
cagcctcaggtctacaatgactttttggatataatgaaagagttcaagtcccaaagtatt
gacaccccaggagtcatcagcagagtgtcacagcttttcaaaggtcaccccgacctcatc
atgggcttcaacaccttcctgccaccgggctacaagatcgaggtgcagaccaatgacctg
gtcaacgtgacaacgcccggtcagatccaccacatcaccccgcatggcatttcagtccag
aacatccccataacaggagcagctacccaacaccaagcccagctcccgtctgcagcgacc
accaccgctccaccccttctaacacagcctacccctgccaagatgagcaagcctctccag
ccccaggccttgacaccgagcagccagagcaatccgtccatccctgcgtacacctccccc
cgctccccgcccatacagctccaccaaccactcagcgggacccccaccggtccacccatg
cagaacaaccagcctgtggagttcaaccacgccatcaactacgtcaacaagatcaagaat
cgcttccagggccagcccgacatttacaaagccttcctggagatcctccacacgtaccag
aaggagcagcgtaatgctaaggaggccggagggaactacacaccagctctgacggagcag
gaggtgtacgctcaggtggccaggctcttcaagaatcaagaggacctgctctcagaattt
gggcaatttctacctgatgccaacagttcagtgctgttaaataagaccacagctgagaaa
gcagaatctgttcggaacgaccacggcggcactgccaaaaagctgcagctcaacaacaaa
cagaggcccaatcaaaacggatgccagatccgtcgacatccaactccagggaccacacca
cccgtcaagaagaagcccaagttactgaatttgaaagattcctcagtggcagaagccagc
aaacatggagtcggcacagaatctctattctttgagaaggtgcgcaaagccttgcgaagt
gcagaggcctatgacaacttcctgcggtgtctggtcatctttaatcaggaggtgatctcc
agggctgaactggtgcagctggtgctgccctttttaggaaaattccctgagctgttcaac
tggtttaaaaacttcctgggatatcgagaaatgtcccacatcgaaacttaccctaaggaa
cgggccaccgagggcatcgccatggagattgattatgcttcctgtaagagactaggctcc
agttacagagccctgcccaaaagctaccagcagcccaaatgcactggcagaactccactt
tgtaaagaggtcttaaatgacacctgggtctccttcccctcctggtctgaggactccacg
tttgtcagctccaagaagactcagtacgaggagcatatctacagatgtgaggatgaacgc
ttcgagttggatgtagtgctggaaaccaacctggccaccatcagagtcctggagacagtg
cagcggaagttgtcccgcatgtctgccgaggagcaggctaagttccgcttggacagcaca
ctgggtggctcctcggaggtcgtgcaccgcaaggccatccagaggatatacggagacaaa
gcaccggacatcattgacggtctgaagaaaaaccctgcagtttctgtccccatcgtgtta
aagaggttaaagacgaaggaggaagagtggcgggaagcccaacgaggcttcaacaagatc
tggagggagcagaatgagaagtattacctcaagtctctcgaccatcaaggcataaacttc
aaacagaatgacaccaaagtgcttcgatccaagtccctgctgaatgaaatcgaaagcatc
tatgatgagcgccaggagcaggcctcagaagaaaatgccaccccacccacaggcccccac
ctgacactcacctacgaggatagtcagatcctggaggacgcagcagcgctcatcatccac
catgtcaagaggcagaccagcattcagaaggaggacaaatacaagatcaaacagatcatc
taccacttcatccccgacatgctgttctctcagcggggtgagctctccgacgtagaggag
gaagaggaggaggaggagatggatctggaggaaggagcctccaaaaagcacaacggcgtt
cccagcagcgggagcccctccaagtccaagctgctgtttagcaacacggcggcgcagaag
ctgcgcggctgcgacgacgcctacaacctcttctacgtcaacaacaactggtacatcttc
ctgcggctgcaccagacgttgtgctcgcgtctccttaggctgtacgggcaggcggagcga
cagattgaagaggaggtcagagaacgagactgggagagagaagtcctgggactcaagaag
gagaagaatgacaatccagccattcagctgagactgaaggagcccatggacatcgaggtg
gaggattactactcagccttcttggagatggtgaggaatctgctggatggaaatatggag
gcttctcagtacgaggactcgttgagggaaatgttcacaatccacgcttacattgccttc
acaatggacaagctcatccaaagcatcgtccggcagctccagcacatcgtgagcgatgag
atctgcgtccaagttacagacctctatctgacagagagcgccaacggggccagcggagga
accatgtccacccagtcttcaaggagctctgcggagtccatctaccagcggaaagcagag
cagcttatgtctgatgagaactgcttcaaggtgatgtttttgagaaacagaggccaggtg
caactcacagtggagctgctggacacagaggaggaaaactcagacgaacccatggaggca
gagcgttggtcagattacgttggacgctacttaaacccagattccaccacacctgagctg
agggagcaccttgcccagaagccagtttttctccccaggaatctgagacggatcaggaag
taccagaagggtcgagagcagctggacaaggaggcctgtgaaggcggcaagaaatccctg
gaaaaggagaaaatggagtgcatgtttaagctcaactcttacaagatggtctatgtcttc
aagtctgaggattacatgtaccgacgcactgccctgctgcgagctcaccagtcacatgag
agggtgagcacacggctgcacaaacgcttccaggcctgggtggaggcgtggtcaaaggag
catgtcacccgcgacatgagcgctgagaccaacaagtggctgatgggtgaagggcgcgat
ggcttattaccttgcaccaccacccgccagcccgaggtcctacacttcatgaacatcaac
aagtaccgtgtcaaatacggcacgcccagcaaggcgccgtag
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integrated database retrieval system
