Lates calcarifer (barramundi perch): 108883044
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Entry
108883044 CDS
T04895
Name
(RefSeq) pulmonary surfactant-associated protein D
KO
K03991
mannose-binding lectin
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04145
Phagosome
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
108883044
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108883044
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
lcf04091
]
108883044
Membrane trafficking [BR:
lcf04131
]
Endocytosis
Phagocytosis
Opsonins
108883044
Lectins [BR:
lcf04091
]
C-Type lectins
Group 3: Collectins
108883044
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lectin_C
Collagen
Motif
Other DBs
NCBI-GeneID:
108883044
NCBI-ProteinID:
XP_018531424
UniProt:
A0A4W6CPS4
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All DBs
Position
LG10:6404063..6406710
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AA seq
261 aa
AA seq
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MSSTFFGNRGEAAHPTDPFNLYNFQFCTEKMRLLLLICTLCLMLPVGYSQCECPRGPPGS
SGPPGFPGPEGKPGATGFPGIPGIPGPPGRVGAPGPLGPPGRDGQPGPMCTQDATGLSCV
DLNALKDRLVKLELAINYAFVRKVGQKYFVSNKERDSFSSAVEFCSQQGLQLALPQNEEE
NNVLTEVFGDVYKTAWIDVNNKKAEGNFEVDQKKRPLTFTKWGEGQPDTSIQGTGCTMLS
ENGVWRVTHECFLNAFIICQL
NT seq
786 nt
NT seq
+upstream
nt +downstream
nt
atgagttctactttctttggaaatagaggagaagcagcacaccccacagatcccttcaac
ttgtacaattttcagttctgcacagagaaaatgaggctgcttctcttaatctgcaccctc
tgcctgatgttgccagttggctacagtcaatgtgaatgtccccgtggtcctcctggaagc
tcagggccacctggtttccccggacctgaaggtaaaccaggtgccactgggtttccaggg
atacctggtatacccggacctccaggtagagtaggggccccaggaccacttggacctcca
gggagagatggacaacctggacctatgtgtacacaagatgccactggtttaagttgtgtg
gacctcaacgctttaaaggacagacttgttaagttagagctggctataaactatgccttt
gtgcgaaaagttggtcagaagtactttgtgtccaacaaggagagagactctttctccagt
gccgtcgagttctgctcccaacaaggcttacagctggctttgccacagaatgaggaggag
aacaatgtactgactgaagtgtttggagatgtttacaaaacagcctggatcgacgtcaac
aataaaaaagcggagggaaattttgaggttgatcagaaaaaacgacctctgacctttacc
aaatggggagaagggcagccagacacatccatccagggtacaggctgcaccatgctgtca
gaaaatggtgtctggcgagtaacacatgaatgtttcttgaatgcgttcatcatttgtcag
ttatag
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