Lates calcarifer (barramundi perch): 108883084
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Entry
108883084 CDS
T04895
Name
(RefSeq) pseudouridylate synthase 7 homolog isoform X1
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lcf03016
]
108883084
Enzymes [BR:
lcf01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
108883084
Transfer RNA biogenesis [BR:
lcf03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
108883084
Prokaryotic type
108883084
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TruD
PUS7L_N
FAM60A
Motif
Other DBs
NCBI-GeneID:
108883084
NCBI-ProteinID:
XP_018531480
UniProt:
A0A4W6CX89
A0AAJ8BAW6
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Position
LG10:7360394..7367161
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AA seq
718 aa
AA seq
DB search
MIDSFLTKHMQRAGSRVDLFPGTHTHTHTHTHTRVGKAAVTCLLPSSPDRVPASRSSKKS
PLQVFSIQETRRVSLCHCCLLLPHPHKHLVQMAESEPLPVQVGEKRSCPENEEDDTRSKK
PKVESDHENGGPAYQDEEPEGEGSDGEEDGETFANMMKHGLTELDVGILKYVSDHKGFSG
ILKERYSDFVVHEINKQGNIVHLDDLSIPPDDEDVPEAKQQQQESDVLTEEQKKQLGELQ
LFKNKEDNVSIEVMDDSKERRTLVHKAIKTQFPGLETKTEEKEGRKFIVAYHAAGKKALA
APRKHFWPKNRGSFCHFVLYKENKDTMDAINVLSKFLRLRPNMFSYMGTKDKRAITVQEI
AVLKITAERLAHLNKCLMNLKLGNFCYKNHPLKLGELQGNHFTVVIRNISGTDEQVDQAM
TSLKQTGFINYYGMQRFGTTAVPTQQVGRAILKNDWNEVVDLILKPRPGAEKEFLVRCRE
EWAKTQDPEAALRKLPNKRCVEGQLLRGLSMYGKKNIVTAFGLIPRNNRLMYIHSYQSVV
WNTMVSRRIEAFGLKAVEGDLVLRGTTAHVLSAEEAESHTIHDIVMPLPGFDVIYPAHHV
GKGYRELLSADGLDIDNMRHKVKDYSLAGAYRRIIIRPSDVSWEVIHYDDPRISLVHSDF
EKLENKPAPVFNKEGKYRALRMEFSLPPSTYATMAIREVLKLDTSIKKQTQLNTTWFN
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgattgacagctttttaaccaaacatatgcagcgggcgggctctagggtggatctgttt
ccgggaacacacacacacacacacacacacacacacacacgtgtgggaaaagctgctgtt
acctgcttactcccatcctcaccagacagagtgcctgcgtcacgctcgagtaagaagtct
cctctacaagtattcagcatccaggagacgagacgtgtttccctgtgccactgttgtctt
ttgctacctcacccccacaaacatttggttcagatggctgaatcagagcctttgcctgta
caggttggagagaagagaagctgtccagagaatgaagaagatgacacacggtccaagaaa
cccaaagtagagagtgatcatgaaaatggaggtcctgcctaccaagatgaggagcctgaa
ggagaagggagtgatggagaggaggatggggagacttttgccaacatgatgaagcatggt
ctcactgagctggatgtgggcatcctgaagtacgtcagtgaccacaagggcttctcagga
atcctgaaggaaagatattcagattttgtggtgcatgaaatcaacaaacaaggcaatata
gtgcatttagatgacctctctatcccaccagatgatgaggatgtccctgaggctaaacag
cagcaacaggaatctgatgtgctgactgaagaacagaaaaagcagctcggagagctgcag
ctctttaagaataaagaggacaatgtctccattgaggtgatggatgattcaaaagagagg
cggacactggtccacaaagccatcaagactcagtttcctggactggagacaaagacagaa
gagaaggaaggacgcaagttcatagtggcatatcatgctgctgggaagaaagctctagca
gctccaaggaaacacttctggcccaaaaaccgtggcagtttttgccactttgtcctgtac
aaggagaataaagacaccatggacgccatcaacgtgctttcaaagttcctcaggctcaga
cccaacatgttttcctatatgggaacaaaggacaagagagctatcactgtgcaggagatc
gctgtgctcaagatcacagcggagaggttggctcacctcaacaagtgcctcatgaacctc
aagctgggaaacttctgctacaaaaaccatcctctaaaacttggggagctgcagggaaac
catttcactgtggtcatcaggaacatctcaggaaccgatgagcaggtcgatcaggccatg
acgtccctcaagcagacaggtttcatcaactattatggcatgcagcgcttcggtaccaca
gctgtgcccacacagcaagttggcagggccatcttgaaaaatgactggaatgaggtggtg
gatttgattttgaagcctcgtcccggagcagagaaagaattcctggtccgttgcagagag
gagtgggctaagactcaggacccagaggcagctttgagaaagctgcccaataaacgctgt
gttgaggggcagctgctgcgaggcctgtctatgtatggcaagaagaacatcgtcactgcc
tttggactgatcccccgtaacaaccgtctgatgtacatccacagttaccagagcgtggtg
tggaacaccatggtgagccgcagaatcgaagccttcggcctgaaggctgtggaaggggac
ctggtgctcagaggaaccacagcacacgtcctgtctgcagaggaggctgagagtcacacc
atccatgacattgtgatgccccttccggggtttgacgtcatctacccagctcaccatgtg
ggtaaaggttacagagagctgctttctgcagacgggctggacattgacaacatgaggcac
aaagtgaaggactattccctggctggagcttacagacgcatcatcatcagaccgagcgac
gtcagctgggaggtaattcactatgatgatcccaggatctccctggtgcattctgatttt
gagaaactggagaacaaacctgcccccgtcttcaacaaagaggggaagtatcgggctctg
cggatggagttctctctgcctccttcaacctatgccactatggcgatccgagaggtcctc
aagttggacactagcatcaaaaaacagacacagctcaacaccacctggttcaactga
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