Lates calcarifer (barramundi perch): 108883172
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Entry
108883172 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 4b
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108883172
Membrane trafficking [BR:
lcf04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
108883172
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Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
LRR_1
I-set
Ig_3
LRR_9
LRR_14
ig
Ig_2
LRR_Zer-1
V-set
LRR_EndoS
Ig_5
LRRNT
C2-set_2
Motif
Other DBs
NCBI-GeneID:
108883172
NCBI-ProteinID:
XP_018531599
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Position
LG15:complement(2668391..2684576)
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AA seq
604 aa
AA seq
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MFVESVVRWGAWSILLQFGLGVSAGGCPPRCVCRPESKEVICSGKHFNSVPESFSSDARR
LDLSHNKIKTVGRRQFSGLPQLQELDLSDNIISMIEVEAFQGLQNLRTLRIKNNRLKIIP
VGVFSGLSSLRFLDLSQNEILVFLDYTFKEMVNLQTLEAGENDLVFISQRAFFGLQNLQK
LNLDRSNLTSIPTEALSQLQSLTHLQMLRLTISTLPNNAFRRLHRLCSLTIENWPALDTM
ASNSLIGLNLTSLVISKCNLSAVPYSALRHLVYLRFLDLSYNPITVIQGNLLGDLLRLQE
LHLAGGSLLRIEPGAFRGLAYFHTLNVTSNQLTTLEESVFHSVGNLQVLRLDGNPLACDC
RLLWVVRRRLRLNFDGHQPTCSSPDAVRQREFRDFSEKEPPRLFTCRPARIMDRRPQEAR
VEEGTTVLFSCKADGDPFPSITWISSHKNVVSPTGRIRVLPNGTLEVRFAQVQDSGTYQC
LAGNAAGNDSLTVGLYVKGLPRNRTIPLFSEDGWVEPSNPQAANSSAQMAKPYPFDAKTL
IIATTMGFLSFLSSVAICFVFMFFWSQSKGQIKHTATIDFVPRSSMGGGGGDGGDGGRFT
MKLI
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgttcgtggagtcagtcgtgcgatggggggcgtggagcatcctgctacagtttggactg
ggtgtatctgcaggaggctgtcctccacgctgtgtatgtcgacctgagtctaaagaagtg
atctgctctggcaaacatttcaactcagtgccagagagcttttccagtgatgccaggcgt
ttggatttatcccacaataagattaaaactgtggggcgccgccagttctctggccttcct
caacttcaagagttggacctcagtgataatataatctccatgattgaggtggaggctttc
cagggcctacagaatctcaggacgcttcggattaagaataaccgactcaagatcatccca
gttggggtgttctctggcttgtccagcctacgctttctggatttgagccagaatgagatt
ctggtctttctggactacaccttcaaagaaatggtgaacttgcaaacactggaagctggg
gagaatgacttagtgttcatctcgcagcgggctttctttggtttgcagaatctgcagaag
ctcaatttagatcgcagtaatctgacctccattccaactgaggcattgtcccagctccag
agcctgacacatcttcaaatgctgcgcctcaccatttctacacttcccaacaacgctttc
cgacgcctccaccgtctgtgcagcctcacgattgaaaactggcctgcactggacactatg
gctagcaacagcctgattggtctcaatttgacctcgcttgtcatcagcaaatgcaatcta
agtgctgttccttactcagcacttcgtcacctggtctatctgcgcttcctggacctgtcc
tacaaccccattactgttatccaaggtaatctgttaggggacctcttgagactccaggag
ttacacctagcaggggggagtctgctacgaatagagccgggggcctttaggggactggcc
tactttcacacgcttaatgtgacatccaatcagctcaccactttggaggagagcgtcttc
cactctgtggggaaccttcaggtgctgcggttggatgggaatcccctagcatgtgactgc
cgccttctctgggtggtccgacgcagactacgcttgaactttgatggacatcagcccact
tgttcctctcctgatgcagtgagacagcgtgaattcagagacttctcagaaaaggagccc
cctaggctgttcacctgccgccctgctcgcatcatggaccgcaggccgcaggaggcaaga
gtagaggagggcaccacagttctcttctcctgtaaggctgacggagatccattcccatct
atcacttggatctcatcccacaagaatgtggtttctccaacaggaagaataagagttctg
cccaatggtactctagaagtgcgttttgcccaagttcaggacagtggcacatatcagtgc
ctggcaggtaatgctgctggcaatgatagcctgactgttggtctctacgtgaagggcctc
cctcgtaaccgaaccatccctttattctcagaagatggctgggtggagccatcaaatccc
caagcggccaactcctcagctcaaatggccaagccatacccatttgatgcaaagaccctg
atcattgccaccaccatgggcttcctgtctttcctcagctcagtggccatctgttttgtc
ttcatgttcttctggagccagagcaaagggcagatcaagcacacagcaactattgatttt
gttcctcggtcttcaatgggtggaggaggaggggatgggggtgatggtggcaggtttacc
atgaaacttatttaa
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