Lates calcarifer (barramundi perch): 108883196
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Entry
108883196 CDS
T04895
Symbol
smarcc1a
Name
(RefSeq) LOW QUALITY PROTEIN: SWI/SNF complex subunit SMARCC1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108883196 (smarcc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcf03021
]
108883196 (smarcc1a)
03036 Chromosome and associated proteins [BR:
lcf03036
]
108883196 (smarcc1a)
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108883196 (smarcc1a)
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
108883196 (smarcc1a)
PBAF complex
108883196 (smarcc1a)
GBAF(ncBAF) complex
108883196 (smarcc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
BRCT
BRCT_2
Motif
Other DBs
NCBI-GeneID:
108883196
NCBI-ProteinID:
XP_018531631
UniProt:
A0AAJ7LVP0
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All DBs
Position
LG15:complement(3357237..3379228)
Genome browser
AA seq
1128 aa
AA seq
DB search
MATAATTAGGTGSGGPATGPVGSGTAVGRKKDGGPSTKFWESSETVSQLETVRQWIGKHY
KKYVQNDSPSSKSLAGLVVQLLQFQEDAFGRRVNNPALTKLPAKCFLDFKAGGALCHILG
SVYKFKSEQGWRRFDLQNPSRMDRNVEMFLNVEKNLVQNNCLTRPTVFLSPDIEQKQASK
LKDIIKRHQGSITDDKSKATHHIYPSPSQQDEEEWLRPVMRKDKQVLVHWGLYPDSYDTW
VSANEVDGDVEDPPSTDRPWKVHAKWVLDTDAFNEWMNEEDYEVDENKKPVSFRQKIFPK
EEESSRTPDRKERKANSAGKKRRRSPSPPSTPVESRKKGGKKGNPGPHWKRRGHRGEEED
TEEDMTKDMDDSSAGASMEEGSMSKNASSKKDSDNTPVKGGNVADLDDMEDDSVLSGGKD
DEDQGKAEINRLIDASEDNVTEQTHHIIIPSYAAWFDYNCIHEIERRALPEFFNGKNKSK
TPEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAIMRVHAFLEQWGLVNYQVDSE
SRPLPMGPPPTPHFTVLADTPSGLIPLNHRPPPIPPPQPMPNFVDKGKDKPIDLQNFGLR
TDLYKKNSKGKAVTTTREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL
PIEDPYLESTETSLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFSR
VREEVPAELVEAHVKKVQEAARSTGKVDPAFGLESSGIAGTAPEEPEKTETTEPEKMDTD
TDSQQADKAELKDEAEKPSESAEKSDKTEATEKVKKEGTEASEREEETEEGGEAKTTPAD
KDKEEAMETSSSEQEKDKEEKAATEEGDDKRKKLEHDIGEGNIATAAAAALASAATKAKH
LAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQAFH
MEQLKYAEMKARQQMEQQAAAAAAAAAAAQAQGQGQAPGSGPHSGPPQPGMHHGGPPPHH
GGPPPHHGGPPPGAAMHPGYPPMGHHPMAPHHPGQTGPMGPSQPMPGRMMPGPPSAGPPP
GGMPPMMPPRHPGAPNGMYPGPAPAQPEALPPAPVGPAAPPSGRVADN
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggcggcgacaacggcaggcggaacgggttcaggcggaccggccaccggcccg
gtcggcagcgggaccgcagtgggacgaaaaaaggacggtggcccgtccacgaaattctgg
gaaagttcagagaccgtatcccagcttgagacggtgcggcagtggatcggaaagcactac
aagaagtacgtccagaatgactccccctccagcaaatccttggcgggcctggtcgtccag
ctgctgcagttccaggaagacgcatttggacgcagggtcaacaatcctgctctcaccaag
ttacctgccaaatgtttcctggatttcaaggcgggaggtgctctctgtcacatcttgggg
tcggtctacaagtttaagagtgagcagggctggcgtcgatttgatctgcagaatccctcc
aggatggacaggaatgtggaaatgttcttaaatgtagagaagaacttggtccagaataac
tgcttgactcgacccacggtcttcctgtcgccggacattgagcagaaacaggccagtaag
ctcaaagacatcatcaaaaggcaccagggctccattactgatgataagtcaaaagccacc
catcacatttacccctcaccatcccaacaagacgaagaggagtggcttcgtcctgtcatg
aggaaagataagcaggtgctggtgcactggggtctctacccagacagctatgatacctgg
gtatcagccaacgaggtggatggtgatgtggaggatcctcccagcactgacagaccctgg
aaggtccatgccaagtgggttttagacacagatgccttcaatgagtggatgaacgaagaa
gactacgaggtagacgagaacaagaagccagtcagcttccgccaaaagatcttccccaag
gaggaggagtcttcccgtacacctgatcgcaaggagcgcaaggccaactccgctggaaag
aagaggaggcgttcgccctcaccacctagcactccagtcgagtcccgcaagaagggagga
aagaaggggaacccagggcctcactggaagcggcggggccacagaggcgaagaggaggat
acagaggaggacatgaccaaggacatggatgactcgtcagctggtgccagcatggaggag
ggcagcatgtctaagaatgcaagttcaaagaaagacagtgacaatacaccagtgaaagga
gggaatgtggccgacttggatgacatggaggatgactctgtgctgtctggcggaaaggat
gacgaggatcagggcaaagctgaaatcaaccggctgattgatgccagtgaggacaacgtg
actgaacagactcaccacatcatcatccccagctacgctgcttggtttgactacaactgc
atccatgaaatcgagagaagagcattgcctgaattcttcaatggaaagaataaatccaaa
actccagagatatacctggcctaccggaacttcatgattgacacgtatcggctaaacccg
caggagtatctcacctccacctcctgccgcaggaacttgaccggggatgtctgcgccatc
atgagggtccatgcgttcttggagcagtggggtttggtgaactaccaggtcgactcagag
agccgccccttgcccatgggccccccacctacaccccatttcactgtactggctgacaca
ccttctggcctcattcccttgaaccaccgacccccaccaattccccctccacagccaatg
cccaactttgtagacaaaggcaaagacaagcccatcgacctgcagaactttggccttcgc
actgacctctacaagaaaaactcaaagggtaaagcagttactactaccagagaatggact
gagcaggagactctactgctcctagaggcactggagatgtacaaagacgactggaacaaa
gtgtcagagcatgtcggttcacgcacccaggatgagtgtatcctgcacttcctgaggctg
cccattgaggatccatacctggaaagcactgagacctctctgggccctctggcctaccag
cccatacccttcagccagtctggaaaccccgtcatgagcacagtagctttcctggcctct
gtggtcgaccccagagtggcatctgctgctgccaaggcagctctagaggagttttcccgg
gtgcgtgaggaggtgccggctgagctggtggaggctcatgtgaagaaggtgcaggaggcg
gccaggagcacagggaaggtggaccctgcctttggcctggagagcagcggcattgctggc
accgcccctgaggagccagaaaagactgaaaccacagagccagagaagatggacacagac
acagactcccagcaggccgataaggcggagttgaaggacgaggcagagaagcccagtgag
tctgcagaaaagagcgacaagacagaggccacagaaaaagtgaagaaggaaggaacagag
gcatcggagcgtgaggaggagacagaggaaggaggggaggccaagaccactccagcagac
aaggacaaggaggaggctatggagacatcgtcctcagagcaggagaaggataaggaggag
aaggcagcaacagaggagggagacgacaagaggaagaagctggagcatgacattggagag
ggaaatattgccaccgcggctgctgctgctctggcatcagctgccaccaaggccaagcac
ttggcagcggtggaggagaggaagatcaagtccctggttgctctgctggtggagacccag
atgaagaaactggagatcaagctgaggcacttcgaggagctcgagaccatcatggaccga
gagaaagaggctttggagcttcagcggcagcagctgctcaccgaacgtcaggcattccac
atggagcagctcaaatacgccgagatgaaggcgaggcagcagatggagcaacaagctgcc
gctgccgccgctgctgctgcagccgcccaggctcaaggacagggacaggccccaggatct
ggaccccactctgggcctcctcaaccaggcatgcaccacggaggacccccaccacaccac
ggaggacccccaccccaccacggcgggccaccacccggtgctgccatgcatcctggctac
cctccaatgggtcaccaccctatggctccccatcacccaggacagacaggaccgatggga
ccaagccagccgatgcctgggcgtatgatgcctggcccgccttctgctggcccccctcct
ggtggcatgcctcccatgatgcccccacgccaccctggagctcccaacggcatgtacccc
ggcccagcacctgcacagcctgaagcgctgcccccagctcctgtgggtcctgctgcgccc
ccgagtggacgagtggctgacaactaa
DBGET
integrated database retrieval system
