Lates calcarifer (barramundi perch): 108883226
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Entry
108883226 CDS
T04895
Name
(RefSeq) procollagen galactosyltransferase 2
KO
K11703
collagen beta-1,O-galactosyltransferase [EC:
2.4.1.50
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf00310
Lysine degradation
lcf00514
Other types of O-glycan biosynthesis
lcf01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
108883226
09107 Glycan biosynthesis and metabolism
00514 Other types of O-glycan biosynthesis
108883226
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
lcf01003
]
108883226
Enzymes [BR:
lcf01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.50 procollagen galactosyltransferase
108883226
Glycosyltransferases [BR:
lcf01003
]
O-Glycan biosynthesis
O-linked Gal type
108883226
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_transf_25
Glyco_tranf_2_4
Anp1
Motif
Other DBs
NCBI-GeneID:
108883226
NCBI-ProteinID:
XP_018531671
UniProt:
A0AAJ7LVQ9
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Position
LG4:17305736..17310319
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AA seq
622 aa
AA seq
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MPFESVGFRLFIVILAGKLFLHTGTEELLADHLLLQPARRESSLLKPTVLITILARNTQH
SLPYFLGCIDRLDYPKDRIAIWAASDHSVDNSTAILQEWLRGVQHLYHSVEWRPLEQPSS
YADEQSPKHWPDSRFTHVMKLKQAALRAARRLWTDYILFVDSDNLLTNRQVLSDMMAENL
TIVAPMLESKSLYSNFWCGITPQGYYRRTPEYIPIRKWKRQGCFAVPMVHSTYLLDLRRR
ASRALAFYPPHHQYPYHLDDIMAFAFSARQAGVQMYVCNRDHYGYLPVPLKQDQTLEEEE
ESFSHTLTEALIDFSMEPSKYVHTTPKEPGKLGCDEIFLINLKRRSDRRGRMLRSLAVLG
VNATLTEAVDGKALNSSQLQAMGIDMLPGYKDPYSDRVLTRGEIGCFLSHYNIWKQVVQE
ELQQVLVLEDDVRFEPRFCSRLVAIMDNVKRVGLDWDLIYVGRKQLQVKEPEYWVKGVRN
LVHPGYSYWTLGYVLSLQGAKKLLQAKPLNKMLPVDEFLPIMFNKHPSDEYMQYFEQRDL
RAFSVDPLLLFPTHYTGEPGYFSDTETSTIWDDEAVETDWDRDGTKHRREQETEELGFRH
VAPHPAHSDVPPLSASRNRDEL
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgccttttgaatctgtgggattcagattatttattgtgattttagcaggaaagctcttc
ctgcacaccggcacagaggagctgctggctgatcatcttctccttcagccagcccggcga
gagtcctccctgctgaaacccacagtgctcatcaccatcctcgcacgtaacacacagcac
agcctcccttacttcttgggatgcatcgacagactggactatccaaaggaccgaattgcc
atctgggcagcctctgaccatagtgtggacaacagcacagccatccttcaggagtggctc
agaggagtccagcacctgtaccactctgtggagtggagaccactggagcaaccgagctct
tatgcagatgagcagagtccaaaacactggcctgactctcggttcacccatgtgatgaag
ttaaagcaggcagcgctcagagctgccagacgactgtggactgactacatactgtttgtg
gacagtgacaacttgctgacaaaccgccaggtgctatctgacatgatggcagagaatctg
acgattgtggcgcccatgttggaatcaaaaagtctttattccaacttctggtgtggtatt
actcctcagggctactacagacgaaccccagagtacattcccatccggaagtggaagcgg
cagggctgctttgcagttcccatggtgcactccacctacctgctggatttgaggcgcaga
gccagcagggcgttggccttctacccccctcaccatcagtacccctaccacttagacgac
atcatggctttcgctttctctgcaaggcaagcaggggtccagatgtatgtgtgcaacagg
gaccattatggatatttaccagtgcccctcaagcaagaccagacactggaggaggaagag
gagagttttagccacacactgacagaggctctcattgacttcagcatggagccttcaaag
tatgtgcacactacacccaaagaaccgggaaagctgggatgtgatgagatctttctgatc
aatctgaagcgccgctcagaccggcgagggaggatgttgcgttctctcgctgtccttggc
gtcaacgccacactgacagaggccgtggacggcaaagcattgaactcctctcagctgcag
gccatgggtatagacatgctgcccgggtataaagacccgtattcagaccgtgtgctgact
agaggggagattggctgcttcctcagccactacaacatctggaagcaggtggtgcaggag
gaactgcagcaggtgctggtgctggaggatgatgtgagatttgagcccagattttgcagc
aggctggtggccattatggacaatgtgaagagggtgggacttgactgggacctaatttat
gtgggtcgtaagcagctgcaggtgaaggagccagagtactgggtaaagggagtcagaaac
cttgtgcacccaggatactcctactggaccttgggttacgtcctatccctgcagggggct
aagaagctcctgcaggcaaaaccccttaacaaaatgctacctgttgatgagttcttacca
atcatgttcaacaagcatcccagcgacgagtacatgcagtattttgagcagagggacctg
agagcattttcagtggatcctttgttgctcttcccgacacactacactggcgaacccggc
tacttcagtgacacagagacgtccaccatctgggacgacgaggcagtggaaacagactgg
gacagagacgggaccaaacaccggcgtgagcaggaaactgaggaacttgggtttcgacat
gtggctcctcatcctgctcacagtgacgtgcctcccctctctgccagcagaaacagagat
gaactctga
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