Lates calcarifer (barramundi perch): 108883296
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Entry
108883296 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: FRAS1-related extracellular matrix protein 1b
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108883296
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
lcf04091
]
108883296
Lectins [BR:
lcf04091
]
C-Type lectins
Lecticans
108883296
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Cadherin_4
Calx-beta
Big_9
Motif
Other DBs
NCBI-GeneID:
108883296
NCBI-ProteinID:
XP_050933005
UniProt:
A0AAJ8BH89
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All DBs
Position
LG17:complement(27056859..27091138)
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AA seq
2175 aa
AA seq
DB search
MAAVCVWLLLLVVTAVCRGSLVVVNSGLDVTRGRSAFVTEKVLKIDVDPSADCKVEVVMN
EPVSQRVGRLTPQVFDCSFLEDEVKYVHNGSPLLNEDTVMLRVYRFTSSDTLVETVVLPV
RVVDSGSGVVELGSAPLVVPQFYGLSNAIDGAVLSIRTAADLVCTVRLMTADAHVPALGQ
LVREEDSTQRKGRETAALCPGNKPCRHDAKEVRFLKTSCQDFLSSGLKYQHLSPPSPEID
YIPIRVELREKATRALLETEAAWLPVLIHGAMQNQPPKAAFMASFILEVDQFILTPLTTA
ALDAKDHETPQERLVFNVTAPPAEGYITHLDDHTKPIRSFTWLDLHEMKVAYQPPNSSQS
QRRNYEVEFQAIDGSYATSPPIVVHISIRAAETNAPRVSWNMGLDLLEGQSRPITWEELQ
IVDNDNIDAVYLVAVDGPLHGRLSVRGGKAFMFRVRDLREGVVVYHHSDSDTTRDHIVFR
ISDGRHSIRHKFPINILPKDDSPPFLINNVAVEVEEGGAVRLEEYMLLASDLDSSDDYIL
YQVVSSARAGQLVRKTSTQETGVPVDSFLQRDLIQGQIYYQHSGEEQFEDSFDFTLSDSH
QPPNLSQTYTVVVHVFPVKDQLPVEVPGSVRSLTVKETEVVYITQSHLHFTDREHPGTDL
TYVITQPCFSPLHPGLMDAGRLFYTDTTNAMKRDHMVPVLKSFTQXFETQKQTLCILNYS
TPFKHTPAVISQHAVNHMKVAFMPPVEDIGPTPLFVQFVFSVSDHHGGTVSGLLFNITVT
PVDDQAPEAFTNLLRVEEGGGAFVTEEHLLVQDRDSGEEALRVEVQRTARHGRLELQGRT
LLQGDRFTLQDLRGLRLRYIHDDSETTEDEVGLKVTDGLNSADVVLPIQILPMNDEPPQL
GGGLRGELICEEGGRVQVTVDYLSATDRDSDDSRLTYMLARSPGRGELQRAGLTVDKFSQ
QDLLQGHIYYVHTGGEVGPEPVSDTVTLIISDGEAGGTDSCCHGDAPPPPVPLHGTLPVY
DLNITVLPVNNKVPIVSLGESMLVVEEGSSACLCGGVLGASDPDSPPDQLTFHLETPPLH
GFLENTLPTPGSEKSNAGVRVESFSLVHLTSGFINYVQSEHKGAEPTVDQLSISVSDGLH
RSAPVPFYIIISPTNDETPSLLLADFSVKEGGIRELTPSILDALDLDAPPDLLTFTVVRP
PAHGRLINAIYDADLSRYRAMGAELLQRSLPVTSFTLQELRSGMKIVYMHDDTETLKDAV
ALQLTDGVHTVQGTAQVTVLPVNDEKPRLLKNAGLEVDSVSRRVISSVALEAEDVDTPPD
QVYYFINAAPRFGKLQLRTESGWTELSAAQNFTQDDVEMNRLWYKHTCRRLRNTASFRGH
DSFRFTLSDLDNESPPQSFFISVHTVQKGDIVLMSKAVHLREGQRVVLNTDILLASDSAG
RPEELVYAVSIPPRHGLVHAVQQPGVPLTSFTQLDVAAHRVCYTHDNSHESESDSFSFVV
TNGASSRSGSLHFTIEHGDRIPPTLDRNAGLRLQDGATETVTSDRLRLTDPDTAAANLSY
VVTQPPRHGKLLLRGVPLTPPLRFTQTDVDGLNLAYRHDLGSPAEIDRFYFLPTDGNNRG
YLEFGQLREEPAVFNIQVDRVDRTPPSLTTRRSPSTVVDLGGGRYGIFITNKHLQASDPD
SPTEELEFSISRPPHFGYLENALTGAYIKGRFTQRDVDQRAVVFVLPADMEVTADSFQFR
LTDPAGNTMLPEILELSWSRVELSATCYRTCETAGTLQIQIQRSGRSIDPAYVAIQVEEG
SAKPGRDFTHSTAALIQFDPGVSVKTWNVHLIDDGLEENHETFTVALKNPKNAVLGQRTS
ASVEIIDPRGGRCDPDELVEEDEKQLPPPPPKPEEEEDPVTDIEAELLWENQPHPPRGDV
PNRRPYLDYGEGEPQDQAAPSYDHIHHHSRQLPGTGAGSTGHRVRGGLKVHLSGERKSEE
KVWTFHSLTPLRLEELKPGDAEWSWSPPGHLQQPLRVGDAPQMDHPAQRHHPELRQHKTG
KSVSSSCPDGWTHYRRRCYILSSSVASWASAERTCSLLFNSSLTSVKSRRDMTWLWKFAG
KKPFWIGLSGGPGRWMWADGRSVSFSRLRGAPQGRVGSNDGSDCVLVENPRSWISTSCSA
ETQHTFICSSAAHTH
NT seq
6528 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgtgtgcgtgtggttgttgctgctggtggtgacggccgtctgcagggggagt
ctggtcgtggtaaactcaggcctggacgtcaccaggggtcgctcggcgttcgtcacagag
aaggtgctgaagatcgacgtggatccgagcgccgactgtaaggtggaggtggtgatgaac
gaacccgtctctcagagagtggggaggctgacgccacaggtgtttgactgcagcttcctg
gaggacgaggtcaaatacgtccacaacggcagccctctgctgaacgaggacacggtgatg
ctcagagtctacaggttcacgtcctcagacacgctggtggagacggtggtcctgccggtg
cgggtggtggactcggggtccggtgtggtggagctgggcagcgctcccctggtggtgcct
cagttctacggtttatccaacgccatcgacggcgccgtgctcagcatcaggaccgcggcc
gacctggtctgcaccgtcaggctgatgaccgccgacgcccacgtccccgctctgggtcag
ctggtgagggaggaggactccacccagaggaagggcagagagacggcggcgctctgtcca
ggaaacaaaccctgtcgtcacgacgccaaagaggtccggttcctcaaaaccagctgccag
gacttcctgagctccggcctgaagtaccagcacctcagccctccgtcaccggagatcgac
tacatccccatcagggtggagctgagggagaaggccaccagggccctgctggagacagag
gcggcatggctgccggttttgatccacggcgcgatgcagaaccagccgccgaaggccgcc
ttcatggcctccttcatcctggaggtggaccagttcatcctcacaccgctcaccaccgcc
gccctggacgccaaggaccacgagacgccgcaggagaggctggttttcaacgtgaccgcc
ccgcccgccgagggctacatcacccacctggacgaccacaccaagccgatcaggtccttc
acctggctggacctccacgagatgaaggtggcctaccagccgcccaacagcagccaatca
cagcgcaggaattacgaggtggagttccaggccatagacggttcctacgcgaccagccca
cccatcgtggtccacatctccatcagggcggccgaaacaaacgcacccagagtctcctgg
aacatgggtctggacctgttggagggtcagtcccgaccaatcacctgggaggagctgcag
atagtcgacaacgacaacatcgacgccgtctacttggtggctgtggacggacctctgcac
gggcgtctcagtgtcagaggtgggaaggcgttcatgttccgtgttcgggacctgagggag
ggcgtggtcgtctaccaccactccgacagcgacaccacccgggaccacatcgtcttccgc
atcagcgacggccgtcacagcatccgccacaagttccccatcaacatcctgcccaaagac
gactccccgccgttcctcatcaacaacgtggcggtggaggtggaggagggcggcgccgtg
aggctggaggagtacatgctgctggcctccgacctcgactccagcgacgactacatcctc
taccaggtggtctcctccgcccgggccgggcagctggtcaggaagacctccacccaggag
acaggagtcccagtggacagtttcctgcagagagacctgatccagggtcagatctactac
cagcactcaggggaggagcagttcgaggactccttcgacttcacgctgtccgacagccac
cagccgcccaacctctcccagacatacaccgtggtggtccacgtcttcccggtgaaggac
cagctcccggtggaggtccccggcagcgtccgctctctgacggtgaaggagacggaggtg
gtttacatcactcagtctcacctgcacttcacggacagagaacatccaggcaccgacctg
acctacgtcatcacgcagccctgcttcagcccgctgcatcctgggctgatggacgcagga
cgtctgttctacacggacaccaccaacgccatgaagagggaccacatggtgccggtgtta
aagtccttcacgcagnngtttgaaacacagaaacagactctctgcatcctgaactattca
acaccgtttaaacacactcccgctgtgatttcccagcatgccgtgaaccacatgaaagtg
gccttcatgcctcccgtggaggacatcggccccacgccgctgttcgtccagttcgtcttc
tccgtcagcgaccaccacggcggcaccgtctccggcctcctcttcaacatcaccgtcacc
cccgtggacgaccaggcgccagaggccttcaccaacctgctgcgggtggaggagggcgga
ggggcctttgtgacggaggagcacctcctggtccaggatcgggacagcggggaggaggct
ctgagggtggaggtccaaaggacggctcgtcacggtcgactggagctgcagggccggacg
ctgctgcagggagaccggttcaccctgcaggacctaagaggactgagactcaggtacatc
catgacgactctgagaccactgaggatgaagtcggactgaaggtgacggacggtctgaac
tcagctgacgtggtcttaccgatacagatcctgcccatgaacgacgagcctccgcagctg
ggcggaggtctgaggggggagctgatctgtgaggaagggggccgggtccaggtgacggtg
gactacctgtcggccacagaccgggacagcgacgactccagactgacctacatgctggcc
cggagtccgggcagaggggagctgcagagagccggactcactgtggacaagttctcccag
caggacctgctgcagggccacatctactacgtccacacgggaggagaggtcggacctgag
cccgtgtccgacaccgtcaccctcatcatctccgacggcgaggctggagggacggacagc
tgttgccatggagacgccccgcccccgcccgtccccctccacggcacgcttcccgtgtac
gacctcaacatcaccgtcctccccgtcaacaacaaagtccccatcgtgtctctgggtgag
tccatgctggtggtggaggagggctcctcggcctgtctgtgtgggggggtcctgggagcc
tcagaccccgacagcccccctgaccagctgacctttcacctggagaccccgcccctgcac
ggcttcctggagaacacgctgccgacgcccggctcggagaagagcaacgcaggagtccga
gtcgaatccttcagccttgtccacctgacctctggtttcatcaactacgtccaatcagag
cacaagggggcggagccgacggtggaccagctgtccatcagcgtgagcgacgggctgcat
cgctccgcccccgtccccttctacatcatcatcagtccgaccaatgacgagacgccttct
ctgctgctcgccgacttcagtgtgaaggagggcgggatcagggagctgactccctccata
ctggacgctctggacctggacgcccctccggacctcctcaccttcacggtggtgcggccg
ccggctcacggccgcctcatcaacgccatctacgacgccgacctgagccgctacagagcg
atgggagccgagctcctgcagaggagcctccccgtcacctccttcaccctgcaggagctc
cgatcaggcatgaagatcgtgtacatgcacgatgacacagaaaccctgaaggacgccgtg
gctctgcagctgacagatggcgtccacacagtccaggggacggctcaggtcactgtgctg
ccggtcaacgacgagaaaccacgactgctcaagaatgctgggttggaggtggactctgtg
agcaggagggtgatttccagcgtggctctggaggccgaggacgtggacacccccccagac
caggtgtactacttcatcaacgctgcgccgcggtttggaaaactgcagctcaggacggag
tcggggtggaccgagctgtcggccgctcagaacttcacccaggacgacgtggagatgaac
cgtctgtggtacaaacacacctgccgccgcctccgcaacaccgccagcttcagaggtcac
gacagcttccgcttcaccctcagcgacctggacaacgagtctccgcctcagagcttcttc
atctccgtccacactgtgcagaaaggtgacatagtgctgatgagcaaggcagtgcacctg
agggaagggcagcgggtcgtcctgaacaccgacatcctgctggcatcagactcggcgggt
cgtccggaggagctggtctacgcggtgtcgatcccgcctcgacacggcctcgtccacgcc
gtccagcagcccggagtcccgctgaccagcttcacgcagctggacgtcgccgcgcaccga
gtctgctacacccacgacaacagccacgagtccgagtccgactccttcagtttcgtcgtc
accaatggcgcctcgtcccgcagcggctccctccacttcaccatcgaacacggcgaccgc
atccccccaaccctcgaccgcaacgccggcctccggctgcaggacggagccacggagacc
gtcacctccgaccggctgcggctcaccgaccccgacaccgccgccgccaacctgagctac
gtcgtcacgcagccgccgcgccacggtaagctgctgctgagaggagtcccgctgacgccg
ccgctcaggttcacccagacggacgtggacggcctgaacctggcttaccggcacgacctg
ggcagcccggcggagatcgacaggttctacttcctgccgaccgacgggaacaacagagga
tacctggaatttggacagctgagagaagagccagcggtgtttaacattcaggtggatcgg
gtggacaggacgccccccagtctgaccaccagacggagtcccagcacggtggtggatctg
ggcggcgggcgttatggcatcttcatcaccaacaaacacctgcaggcctccgaccccgac
agccccacggaggagctggagttctccatcagcagaccgccacactttggctacctggag
aacgccctcacaggagcctacatcaaaggtcgtttcacccagcgggacgtggaccagaga
gccgtggtgttcgtcctcccggccgacatggaggtgacggccgacagcttccagttccgc
ctcaccgacccggcaggaaacaccatgctgcctgaaatactggagctgtcctggtctcgg
gtggagttgtcagcgacctgctacagaacctgtgagacagcagggactcttcagatccag
atccagcgcagcgggaggagcatcgatccggcctacgttgctatccaggtggaggaagga
tcggccaaaccgggcagagatttcactcacagcaccgccgccctcatccagtttgaccca
ggagtcagtgtgaaaacctggaacgttcacctgatagacgacggtctggaggaaaaccac
gagaccttcactgtcgccctgaaaaacccgaagaacgccgtcctgggacagaggacctct
gctagtgttgagatcattgaccccagaggagggaggtgtgacccggacgaactggtggag
gaggacgagaagcagctcccccctcctcctcccaagccggaggaggaggaggaccccgtc
accgacatcgaggcggagctgctgtgggagaaccagcctcaccctcccagaggagatgtc
ccgaaccgccggccctacctggactacggagagggggaaccacaggaccaggccgccccc
agctacgaccacatccaccaccacagcaggcagctgccggggacaggagctgggagcact
ggacacagagtcagaggaggactaaaggttcatctgtcaggagagaggaagtctgaggag
aaagtctggacgttccacagtctgactcctctccggctggaggagctgaagccgggtgat
gctgagtggagctggtcgcctcccggtcacctccagcagccgctccgagtcggagatgct
cctcagatggatcatccagcacaaagacaccacccggagctacgtcagcacaaaacaggg
aagtcggtcagcagctcgtgtcctgacggttggactcactacaggagacgttgttacatc
ctcagctcgtctgtggccagctgggccagcgccgagaggacctgctctctgctctttaac
agcagcctgaccagcgtgaagtccaggagagacatgacctggctgtggaagtttgccggg
aagaagccattttggatcggtctgtctggaggtccgggtcgctggatgtgggctgacggt
cggtccgtgtccttctccagactgaggggggcgccgcagggtcgcgtcgggtctaacgac
ggctcggactgcgtgctggtcgaaaaccccaggagctggatttccacgagctgctccgcc
gaaactcaacatacattcatctgttcgtcagcggcccacactcactga
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