Lates calcarifer (barramundi perch): 108883562
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Entry
108883562 CDS
T04895
Name
(RefSeq) pre-mRNA-splicing factor 38B
KO
K12850
pre-mRNA-splicing factor 38B
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108883562
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcf03041
]
108883562
Spliceosome [BR:
lcf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
108883562
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Motif
Pfam:
PRP38
Motif
Other DBs
NCBI-GeneID:
108883562
NCBI-ProteinID:
XP_018532383
UniProt:
A0A4W6EAB1
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Position
LG4:complement(14543921..14549190)
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AA seq
468 aa
AA seq
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MANIGNQLPTQAVSKPAPGKHGNVLPLWGNEKTMNLNPMILTNVLSSPYFKVQLYELKTY
HEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYKLFTLKLTR
KQLMGLITHTDSPYIRALGFMYIRYTQPPTDLIEWYDGFLDDEEELDVKAGGGCVMTIGE
MLRSFLTKLEWFSTLFPRIPVPVQKIIDQQIKARPRKVAQKETQEEEATFTESGRQGERR
RSRTPRRTPSPRRSPKRSRSRSHHRERDRHGPSFDRELERERDRQRKEREGRDRDRDRDR
GDRGDRERRRSRSAERNQDRRERRRSRSGSRERRNERRDKERDGGDDRSRRKDRDHHKDR
GTERERSRDKKSRGETDDRRHKDDRERHREERKAKRSSRSRSRERKHKSGEEKSRKRERS
HSRDRDRERDGEQRSHKRSRSKERSHHQRESSNDHSKHSERRRSQSTE
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atggctaacatcgggaaccagctaccaacacaggccgttagcaagcctgcaccaggaaaa
catggaaatgtactgcctctgtggggcaacgaaaagactatgaacctcaatccaatgatt
cttaccaatgtgctgtcctcgccgtatttcaaagttcagctttatgaactaaagacctac
cacgaagttgtggacgaaatctatttcaaggtgactcatgttgagccttgggaaaaggga
agcagaaagactgcaggccagactggaatgtgcggaggggtgcgtggagttgggactggt
ggtattgtgtctactgctttctgtcttctatacaaactgtttacgctcaagctgactcgt
aaacagctgatgggtctgatcactcacacagactctccatacataagagcacttggcttc
atgtacataagatacactcagcctccaacagatttgattgaatggtacgatggcttcctg
gatgatgaggaggagcttgacgtgaaggcaggaggtggctgcgtgatgaccattggagaa
atgctacgctccttcctgaccaaactggagtggttctccactcttttcccccgtatccca
gtgcctgtgcagaagattatcgaccagcagataaaggcaaggcctcgcaaggtcgctcag
aaagagacacaggaggaagaggccacgttcacagagtcagggaggcaaggggagcggcgc
cgctccaggactcccagacggacaccgagcccccgaaggtcgcccaaacggtcaaggagc
aggagccaccaccgcgagagggaccgccacggccccagcttcgaccgagagctggagagg
gagcgtgaccggcaaaggaaggagagggagggcagggaccgcgatagggacagagacagg
ggggaccgaggggacagggagaggcggcggtcgcgcagcgcagagaggaaccaagaccgg
cgagaacgcaggagaagtcgcagtggcagccgggaacgaagaaacgaacgcagagacaaa
gaaagagacggcggggatgacaggagcaggagaaaggacagggatcaccataaagatagg
ggcacagagagggagaggtccagggacaagaagagcagaggagagactgacgacaggagg
cataaagacgacagggagaggcacagggaagagaggaaggccaagaggtcgagccggagt
cgaagcagggagaggaagcacaagagtggggaggagaagagcaggaaaagggagcgcagc
cacagcagagatagagacagggagcgagacggagagcagcgttctcacaaacgtagtcgt
agcaaagagaggagtcatcatcagcgtgagtccagtaatgaccatagtaaacatagtgaa
cgcagaaggagtcagagcactgagtaa
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