Lates calcarifer (barramundi perch): 108883584
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Entry
108883584 CDS
T04895
Name
(RefSeq) potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 isoform X1
KO
K04955
hyperpolarization activated cyclic nucleotide-gated potassium channel 2
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lcf04040
]
108883584
Ion channels [BR:
lcf04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (HCN)
108883584
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ion_trans_N
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
108883584
NCBI-ProteinID:
XP_018532430
UniProt:
A0A4W6E9B4
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Position
LG4:14829433..14858357
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AA seq
1161 aa
AA seq
DB search
MLNVMDRNEVSPASAATMKKKAVGGSGCSHISAPKAVASKCTRSTSIHNCLDSGSPGAPS
GKQPGVASNVVMDETDDGEEESKFQHPRLRRAGGSGSGGGGGGGGGGSIRMKNFTPGGGA
ATSASRRNSNKEPCLTHTEDAPAAPRPTAASRATETQTPCPGDAAQRGETSRASGAEASE
SAVAVEVLNATAGDVCNSVAPISSMKCNKNGECRRDSGTGSLRSIISKQEKQTGGSGRAE
DGGSAKRGACNSTTASMDGSITPGGSLTGGHGGESANPSGVPEKKDSKVSFSNAPSRKAS
SSLHGPTQTQTQQPRNSVTFQKPEDGPPIVPAEDAEPRGSQASFMQRQFSSMLQPGVNKF
SLRMYGSQKAVEREQERVKSAGNWIIHPYSDFRFYWDFTMLLFMVGNLIIIPVGITFFKD
ETTTPWIIFNVVSDTFFLMDLVLNFRTGIIIEDNSDIILDPKTIKKKYLKTWFIVDFISS
IPVDYIFLIVEKGIDSEVYKTARALRIVRFTKILSLLRLLRLSRLIRYIHQWEEIFHMTY
DLASAVMRIFNLIGMMLLLCHWDGCLQFLVPMLQDFPSDCWVSLNKMENDTWSELYSFAV
FKAMSHMLCIGYGRQAPESLSDIWLTMLSMIVGATCYAVFIGHATALIQSLDSSRRQYQE
KYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEESILGELSEPLREEIVNFNCRKL
VASMPLFANAEPNFVTAMLTKLRFEVFQPHDYIIREGTIGKKMYFIQHGVCSVITKGTLA
MKLSDGSYFGEICLLTRGRRTASVRAETYCRLYSLSVDHFNEVLEEYPMMRRAFETVAID
RLDRIGKKNSILMHKVQHDLNSGVFNNRENEMIQEIVKYDREMVKLVDLQRPRAMSMTPS
IGGIFAPPGQPQTGSAIATLQQAVAMSFCPQMASPLVGPGTLQSPRMVRRFQVVQNLSSP
ISMSPLQSQPPQTLGGAFGSAISSPPVQSPLAASGRTFQYMASAGPSGSQLSLVQHHAPS
PTQTQQRPASHKSTHSLHAGSLSQDTRALSASQPSLPQEGTPQAASAAPSPPPSTRTSNT
SIGPPQPPHPSLPGTSGVGRSAGAQQRVAFASTPPPGGPAGMGAVAAAAGSGPPDSGVPK
KDSIVSLPELDSARSRLSSNL
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgcttaatgtcatggacaggaatgaggtttcaccggcgtccgctgccaccatgaagaag
aaggcggtgggcggcagtggctgcagccacatcagcgcacccaaggctgtcgcgtccaaa
tgcacgagaagcaccagcatccacaactgtttggactccggttctcccggcgcaccgagc
ggtaagcagcccggtgtggccagcaacgtcgtgatggacgagacggacgacggggaagag
gagtccaagtttcagcatccgcggttgcgccgagccggggggagcggcagtggcggaggt
ggaggaggaggaggcggcggcagtatcaggatgaagaactttacgccaggagggggagcc
gcgacctcggcttccaggagaaactccaacaaggagccctgccttacgcacacagaggac
gctcctgccgccccacggcccactgctgcctccagagctaccgagacccagacaccctgt
ccgggcgatgctgcccagcgcggcgagaccagcagagcatctggggcggaggcgtcggaa
tcagcggtcgcggtagaggttttaaacgcgacagcgggtgatgtttgcaacagcgtcgct
ccaatttccagtatgaaatgcaacaaaaacggagaatgcaggagggactcgggtaccggg
agcctgcgctcaatcatctccaaacaggagaagcagacgggaggctcggggagggccgag
gacggagggagcgccaagcgcggagcctgtaactcgactaccgccagcatggacggctcg
atcacgccaggcgggtccctgaccggggggcacggaggagagagcgcaaaccccagcggt
gtccccgagaaaaaggactccaaggtgtccttctctaacgcaccgagccggaaagcctcg
tcctcgctgcacggcccgactcagactcagacccagcagcccaggaactctgtcactttc
cagaagccggaggatggaccgccaattgtgcccgccgaggatgcggagcctcggggcagc
caagccagcttcatgcagcggcagtttagtagtatgctgcagcctggagttaacaaattc
tccttacgcatgtatggtagtcaaaaagcagtggagagagagcaggagagggtaaaatca
gctggaaattggattatccacccttacagcgatttcaggttctactgggatttcacaatg
ctgctgtttatggtgggcaacctgatcatcatccccgtgggcatcaccttcttcaaggac
gagaccactacgccctggatcatcttcaacgtggtttccgacaccttcttcctcatggac
ctggtgctcaactttcgcacgggaatcatcattgaggacaactcggacatcattttggac
cctaaaaccattaagaagaagtacctaaagacctggttcattgtggactttatctcctcc
atcccagtggattacatattcctcatagtggagaagggaatcgactcggaggtgtacaag
acagcccgcgccctgaggatcgtccgctttaccaagatcctaagtcttctgaggctgttg
aggctctccagattaatacgctacattcaccagtgggaagagatcttccacatgacctat
gacctggccagtgcggtgatgcggatctttaacctgattggtatgatgctgctgctgtgt
cactgggacggctgcctacagttcctggttcccatgctgcaagacttcccctcagactgc
tgggtgtccctcaacaagatggagaatgatacctggtcagagctttactccttcgctgta
ttcaaggcaatgagccacatgctgtgcatcggttacggccggcaggccccggagagtcta
tcagatatctggctcaccatgctgagtatgattgtaggagctacttgctatgctgttttt
attggccatgcaacagctcttatccagtccctggactcctccagacggcagtatcaggag
aagtacaaacaagtggagcagtatatgtccttccacaagctgcctgcagacttccgacag
aaaatccatgactattatgagcacagataccagggcaagatgtttgacgaggagagcatt
ctgggagaactcagcgaacctctcagagaggaaattgtcaacttcaactgtcgcaagctg
gtggcgtccatgccgctgtttgccaatgcagagccaaattttgtgacggccatgctgacc
aagctgcgttttgaggttttccagccacatgattacatcataagggagggcacaattgga
aagaaaatgtacttcatccagcacggagtctgcagcgtcatcaccaagggcaccctcgcg
atgaaactctctgatggctcttattttggagagatctgtttattgacgaggggtcggcga
acagccagcgtgcgagcagagacttactgccgactctactctctgtctgttgaccacttc
aatgaggtgctggaagaatatcctatgatgagacgagcctttgagaccgttgccattgac
cgtctggaccgcattggtaaaaagaactccatcctgatgcacaaggttcagcatgatctc
aactccggtgtcttcaacaaccgggagaatgagatgatccaggagattgtcaaatacgac
cgggagatggtgaagctggtggacctgcagcggccgcgggccatgtccatgaccccttct
atcggcggtatctttgctccccctggtcagccgcagacgggctctgctatcgccaccctc
cagcaggccgtggccatgagcttctgcccccagatggcaagtccgctggtgggaccaggg
actctgcagtctccccgtatggttcgaaggttccaggtggtgcagaacctgtccagcccg
atctccatgtctcctcttcagtctcaacctcctcagacgctcggaggggcgtttggatct
gcaatctccagccctcccgtccaaagtccactcgcagcttcaggacggactttccagtac
atggcgagcgcgggaccctctgggtcccagttgtccctagtacagcaccatgcacccagc
cccacacagacccagcagaggcctgcctcacacaagagcacccactcccttcatgcgggc
agcttgagccaggatacccgggccctgtctgcctctcagccttcactcccccaggaggga
acaccacaagctgcctctgcagcccccagccctccgccctccacccgcacctccaacacc
tccatcggcccccctcagccccctcacccgagcctgccgggaacctcaggggtggggaga
tcagcaggagctcaacagagggtggcctttgcctccacaccgcctcccggtggacctgct
ggaatgggggcagtagcagcagctgctggatcaggacctccagactctggagttcccaag
aaagattcaattgtcagccttccagagctagactctgccagatcccggctgtcttccaac
ttgtga
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