Lates calcarifer (barramundi perch): 108883639
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Entry
108883639 CDS
T04895
Name
(RefSeq) dynein, cytoplasmic 1, intermediate chain 2a isoform X1
KO
K10415
dynein cytoplasmic 1 intermediate chain
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04145
Phagosome
lcf04814
Motor proteins
lcf05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
108883639
09142 Cell motility
04814 Motor proteins
108883639
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
108883639
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lcf03036
]
108883639
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
lcf04812
]
108883639
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Centromeric chromatin formation proteins
SAC (spindle assembly checkpoint) factors
Motor proteins
Dynein complex
108883639
Cytoskeleton proteins [BR:
lcf04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Dyneins
108883639
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_Prp19
Dynein_IC2
WD40
WD40_WDHD1_1st
Beta-prop_EML
WDR55
Beta-prop_RIG_2nd
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_IFT140_1st
Beta-prop_HPS5
EIF3I
Beta-prop_WDR19_1st
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_SPT8
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Nbas_N
Beta-prop_DCAF4
Beta-prop_IP5PC_F
DUF4407
Motif
Other DBs
NCBI-GeneID:
108883639
NCBI-ProteinID:
XP_018532527
UniProt:
A0AAJ7LUK3
LinkDB
All DBs
Position
LG4:complement(15775087..15782919)
Genome browser
AA seq
651 aa
AA seq
DB search
MSDKSELKAELERKKQRIAQIREEKKRKEEEKKKKDGDSKRGAEAGSGSSAGHEDSDLER
KRREAEALLQSVGITPDIPHAQPLRVVTEDTCLFHYLVPAPMSPSNKSVGSDAGSQDSGD
GNAGPRTLHWDPDPSTLQLHSDSELMGRGAVRLGMSKVTQVDFVPREMVSYSKETQTPTE
AMTHTDQKADEEEDEEITAPPPMDDSQEDKDEQGEQQEEDTPKELTEEEKLQVLHSEEFL
SFFERGSRIVERALAEQVDVCFDYSGRDLEDKEGDLQAGAKLVLNRQFADERWTKNRVVT
CLDWSPQYPELLVASYNNNEDAPHEPDGVALVWNMKYKKATPEYIFHCQSEVMSAGFAKF
HPNLVVGGTYSGQIVLWDNRSNKRTPVQRTPLSAAAHTHPVYCVNVVGTQNANNLISIST
DGKMCSWSLDMLSQPQDSLELVFKQSKAVAVTSMAFPLGDVNNFVVGSEDGSVYTACRHG
SKAGITEVFEGHHGPVTGLSCHSAGGPVDFSHLFISSSFDWTVKLWSTKSTRPLYSFEDS
CDYVYDAMWSPTHPALFACVDLAGRLDLWNLNNDTEVPTASVCVDGSPALNRVRWAHTGK
EIATGDSEGQVQVYDVGEQICVPKADEWTRFVRTLAEINENRDEADELANV
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacaagagcgagctgaaggctgaactggagaggaagaaacaacggatcgcccag
attcgagaggagaagaagaggaaagaggaggagaagaaaaagaaggatggagattcaaag
cgtggagcggaggcgggcagtgggtcgtctgccggccatgaagactccgacctggagagg
aagaggagggaggcggaggcgctgctgcagagtgttggcatcacccctgacataccccac
gctcagcccctgagggtagtaacagaagatacatgtctgtttcactacctagtccccgcc
cccatgtctccctccaacaaatcagtgggcagcgatgcaggaagccaagactctggggac
gggaacgctggaccaaggacattgcattgggatcctgacccctctactctgcaactccac
tccgactctgagctgatgggacgtggcgctgtgaggctgggtatgtccaaagtgacccag
gtggactttgtcccaagggaaatggtgtcttactccaaagaaacgcagacacccaccgag
gcgatgacacacacagaccagaaagcagatgaggaggaggatgaggagataaccgctccc
ccaccaatggacgacagccaggaggataaggatgaacagggtgaacagcaggaggaggac
actcccaaggagctaaccgaagaagagaagctgcaggtcttgcactccgaggagttcttg
tcatttttcgagcgaggcagcagaattgttgagagagctctggctgagcaggtggacgtc
tgcttcgattacagcggcagagatctagaggacaaggagggtgacttacaggcaggcgca
aagttggttctgaacagacagtttgcagatgagcgctggactaaaaacagagtggtcacc
tgtctggactggtcccctcagtacccagagctgcttgtggcctcatataacaataatgag
gatgctccccatgagcctgatggagtggcactggtctggaacatgaagtacaagaaggcc
acacccgagtacatcttccactgccagtcagaggtgatgtccgctgggttcgcaaagttt
catcccaacctggtggtgggtgggacgtactccggacagattgtcttatgggacaacagg
agcaacaagcgcacccctgttcagagaacacccctgtctgcagctgcacatacacaccca
gtctactgtgtgaacgtggtgggaacccagaacgcaaacaacctgatcagcatttccacc
gacggcaaaatgtgctcctggagcctcgacatgctctcacagccacaggacagtctggag
ctggtcttcaaacagagcaaggcagtggctgtcacctccatggccttccctctgggcgac
gtgaacaactttgtggtggggagcgaagacggctccgtctacaccgcctgtcgccacggg
agtaaggcgggtatcactgaggtgtttgaaggccaccatggtccagtgaccgggctgagt
tgtcacagcgctggcggacctgttgacttctctcatctgttcatctcgtcctcttttgac
tggaccgttaaactctggagcactaagagtacccgtccgttgtactcattcgaggacagc
tgtgactacgtttatgatgcaatgtggtctccaacacaccctgctctgtttgcctgcgtg
gacctagctggacgtctggacctgtggaacctcaacaatgatactgaagttcccaccgcc
agtgtgtgtgtggacgggtctccagcactgaaccgtgtgagatgggctcacactggaaaa
gagattgccaccggggactcagagggacaggtgcaggtctacgacgtaggggagcaaatc
tgcgtgcccaaggctgacgagtggacgcgcttcgtgaggacgctggctgagatcaatgag
aaccgcgacgaggctgacgaactggccaacgtctga
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integrated database retrieval system
