Lates calcarifer (barramundi perch): 108883653
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Entry
108883653 CDS
T04895
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03013
Nucleocytoplasmic transport
lcf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108883653
03015 mRNA surveillance pathway
108883653
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108883653
Enzymes [BR:
lcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
108883653
5.6.2.5 RNA 5'-3' helicase
108883653
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
108883653
mRNA cycle factors
Common to processing body (P body) and stress granule
108883653
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
NPHP3_N
nSTAND3
Helicase_RecD
DEAD
AAA_16
SRP54
UvrD-helicase
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
108883653
NCBI-ProteinID:
XP_018532551
UniProt:
A0A4W6F6V2
LinkDB
All DBs
Position
LG4:complement(16154769..16169739)
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AA seq
1115 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDSQVNG
PDGVLQNGDDPVVKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPPWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLAL
HNQTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
TINPGGRFMSTAMYDAREALIPGSVYDRSSNGRMSNMYFQTHDQIGMIGTGPNPMTSMNI
PIPFNLVMPPIPPSGYMGQVNGPTAGRGGGMKGKAGSGGGGGTRGGRQRNRSNMGNHGGG
NGGADRGHGGHMSASQASQDLGSQPFSQGPLTQGYINMSQPSQMSQPGLSQPELSQDSYL
GDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgaggcgtacgggccgagctcccagactctaacgttcctggacaccgaggaa
gccgagctgctgggagcggacacccagggctccgagtacgacttcaccgattttaccctg
ccgagccagacccagacccaaggccagacccagagtcagctcgacagccaggttaatggt
cctgacggggtgctgcagaatggagacgaccctgtggtaaaagccagtcagctgctggca
gaactgaactttgaggaggatgaggaggacacctactataccaaggacctccctgtacat
gcctgcagttattgtgggattcatgatccagcctgtgtggtctactgcaataccagcaag
aagtggttttgtaatggccgtggaaacacatccggcagccacattgtaaaccaccttgtg
agagcaaagtccaaggaggtgaccctgcataaagacggccctctgggggaaactgtactg
gagtgttacaactgtggttgtcgcaatgtcttcctgctgggcttcatccccgccaaggcc
gactcagtagtggtgttactgtgcaggcagccatgtgccagccagagcagcctgaaagac
atcaactgggacagctcacagtggcagcctctcatccaggaccgctgctttctgtcctgg
ctggtcaaaatcccctcagagcaggagcagctcagggcccgccagatcactgcccagcag
atcaacaagctggaggaactctggaaggaaaatcccactgcgaccctggaggacctggag
aaacctggtgtggatgaggagccccaacacgttctgctccgctacgaggacgcctatcag
taccagaacatctttggtcctcttgtgaagctagaagctgactacgataagaaactcaaa
gagtcccagactcaagacaacattacagtgcgatgggacttgggactgaataaaaagagg
attgcatatttcactcttcccaagacagattcagatatgcgactgatgcagggagatgaa
atttgcctgaggtacaaaggagacctggcccctccctggaaaggcattggacatgtcatc
aaagttcctgacaactatggtgatgagattgccatagagctgaggagcagtgccggggct
ccagtggagatcccacacaactttcaggttgactttgtgtggaagtccacttccttcgac
aggatgcagagtgccctgaagacatttgctgtggatgagacatcagtgtctggttacatc
taccacaaactgctgggacatgaggtggaggatgtggttatcaagtgtcagctgcccaaa
cgcttcactgctcaaggcctgcctgatcttaaccactcccaggtgtatgctgtgaagaca
gtgctgcagcgtcccctcagtctgatccagggtcctcctggtacagggaagacagtaacc
tctgccaccattgtctaccacctggccagacagggcaatgggccagtgctcgtgtgtgcc
cccagtaacattgccgtcgaccagctgacagagaagatccaccagacaggactcaaggtg
gtgaggctgtgtgccaagagcagggaagccattgactcacctgtgtccttcctggctttg
cacaaccagacccgtaacatggacagtatgccagagcttcagaagctccaacagctgaag
gacgagactggtgagctgtcatcctcagatgagaagcgctacagagctctgagacgcact
gctgagagagagctgctcatgaatgctgatgtgatctgttgtacctgtgttggggcggga
gatcctcgtctggccaagatgcagttccgctcaatcctcatcgatgagagcacccaggcc
actgaaccagagtgtatggtgcctgtggtcctgggggccaagcagttgattttggtgggt
gatcactgccagctgggtcctgtggtgatgtgtaagaaggcagctaaagcaggtctgtcc
cagtctctgtttgagcgtctggtagttttggggatccggccaatccgtctgcaggtccaa
taccgcatgcacccagccctcagcgccttcccctccaacatcttctacgaaggctctctg
cagaacggagtcactgctgccgaccgtgtaaagaaaggttttgactttcaatggccacag
ccggacaagccgatgttcttttacgtcacacaaggccaagaagaaattgccagctctgga
acatcctatctcaacagaactgaggcagctaatgtagagaaaataaccacaaggttactg
aaggctggagcaaaaccagaccagatcggcatcatcaccccctatgagggacagaggtcg
tacctggtccaatacatgcagttcagtggctccctccataccaagctctatcaggaggtg
gaaatagccagtgtggatgcctttcaaggcagagagaaagacttcatcatcctgtcctgt
gtgagggccaatgagcaccagggcatcggcttcctcaacgatccccgacgtctaaacgtg
gcactcaccagggccaggtatggtgtcatcattgtgggaaaccctaaagccctgtctaag
cagcccctgtggaaccatctgctcaactactacaaggagcagaaggtcctggttgagggt
cccctcaacaacctgagggagagcctcatgcaattcagcaagccacgcaagttggtcaac
accatcaaccctgggggtcgattcatgagcactgccatgtatgatgccagagaggccctc
attcctggatctgtttacgaccgcagcagcaatgggcgtatgtccaacatgtatttccaa
acccatgaccagatcggtatgatcggcacaggccccaatcccatgacctccatgaacatc
cccatccccttcaaccttgtgatgccccccatacctccctctgggtacatgggacaggtg
aacgggcccacagcaggtcgtggtggaggtatgaagggcaaggcaggcagtggaggagga
ggcgggactcgaggcggccgtcaaagaaaccgcagcaacatggggaaccatggtggagga
aacggaggagcggaccgtgggcacggagggcacatgagtgccagccaggccagccaggac
ctgggctcccagcccttctcccaggggcctctgacacagggctacatcaacatgagccag
ccgtcacagatgagtcagcctgggctctcccagcctgaactctcccaggacagttacctt
ggagacgagttcaagtcccagattgatgtggctttgtcccaggactccacctaccagggg
gagcgggcctaccaacacggtggtgtgactggactgtcccagtactag
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