Lates calcarifer (barramundi perch): 108883710
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Entry
108883710 CDS
T04895
Name
(RefSeq) putative RNA polymerase II subunit B1 CTD phosphatase rpap2
KO
K20827
RNA polymerase II-associated protein 2 [EC:
3.1.3.16
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lcf01009
]
108883710
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcf03021
]
108883710
Enzymes [BR:
lcf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
108883710
Protein phosphatases and associated proteins [BR:
lcf01009
]
HAD phosphatases
Fcp/Scp phosphatases
108883710
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
108883710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RPAP2_Rtr1
Motif
Other DBs
NCBI-GeneID:
108883710
NCBI-ProteinID:
XP_018532663
UniProt:
A0AAJ7LUR8
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All DBs
Position
LG4:complement(16918705..16927876)
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AA seq
681 aa
AA seq
DB search
METEERRRSGASSKTSKKGGKRVKALTAEEEARRRELVKEKLREKLELERRALQIVERLL
EDSVTEDFLTDCAKFITPANYKDAIEERSIAKLCGYPICPNKLGKIPNQQFKISTKTNKV
YDITERKCFCSNFCYKASKEFELQISKTPLWLRQHESPPEIKLMKKGDGGSSGEEVMLAE
RRLQEEDIENPLQPEDLHNSQEQHHAAGDLGHSDSSDLEQEQDFVSSVVSQRQGPRVHWG
DLPKRTDEDKKGKRGKTEKKKKSGEGDEEEIKQIQDAEREGKMREDGERKETHAPKTEVR
TDAERLHIINTDLVLPEEEDLSEKPSVEEAAAKMNLCSLSETVTHTVSPSQPEHTTPLTS
PPLTDSNPPTESKHVSSSTLTTTDQNNHNTTTPSQPELNITQVGMSKKGAAGLRDLLKNC
TATAPTPDSIRLNLLECLKRTLKEWSTDETLKFLYGDDHSLGSPFADVKEEEEEEDKEEE
LDEDDLEDEVTAEDGRGADTGMLKRPSAAVPDYKTLRDETQQMELRVREFYKGTWILPEE
VEAPSGNKVTAQDQGKKDPVLPLVDSNAQHLIQKRITVEKLTSCLRNIVGPLRLTMNDIS
TDLNRLVRTFRFTNTNIIHKTPEWTLIAVVLLHLLSEVSLVVREALETTASVQYLKTLME
ELCLQEHDLLNLVRLFKTPTH
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggagacggaggagaggagaaggagcggagcctcctctaaaacctctaaaaaaggtgga
aaacgtgtcaaagcactgaccgctgaggaggaagcaagaaggagagaactggtgaaggag
aagctgagggagaagctggagctggagagaagagctctgcagatagtggagcgtctcctg
gaggacagcgtgactgaagacttcctgactgactgcgctaaattcatcactccagctaat
tacaaagatgctatcgaggagagatccattgctaaactgtgcggttatcccatatgtccg
aataaactgggcaagatcccaaatcaacagtttaaaatttctactaagaccaataaagtg
tacgacattacagagcgcaagtgtttttgcagtaatttctgctacaaagcctccaaagag
tttgagctccagatatcaaagacgcctctttggctcaggcagcatgagagccctccagaa
attaaactgatgaagaaaggagatggagggagctctggtgaggaggtgatgctggcagag
aggcgtctccaggaggaggacatcgagaacccgctgcagcctgaggaccttcacaactct
caagagcagcatcatgccgcaggcgacctcggccacagcgacagcagcgacttggaacaa
gagcaagactttgtctccagcgtggtctcccagcggcagggacccagggtgcactggggt
gacctgcctaaacgcacagatgaagacaagaaaggaaagcgagggaagacagagaaaaag
aaaaagagtggagagggagatgaagaggagatcaagcaaattcaggatgcagagagggag
ggaaaaatgagagaagatggggaaagaaaagaaacacatgcacctaaaacagaagttaga
actgatgctgaaaggttgcacataataaacactgacctggtactgccagaggaggaagac
ctgtctgagaaacccagtgtggaggaggctgcagcaaagatgaatttgtgcagtttgtct
gagacggtcactcacactgtttcaccttcgcagccagaacacaccacaccactcacctct
cctccacttactgactcaaaccccccaacagaaagcaaacacgtctcctcttcaacacta
accaccactgatcagaacaaccacaacacaacaacaccctcccagccagaactcaacatc
acccaggtgggtatgagcaagaaaggggcagcagggctacgagatctactcaagaactgc
accgccactgcacccacacccgactccatccggctgaatctcctcgagtgcttgaaaaga
acattgaaggagtggagcactgacgagaccttaaagttcctgtacggtgatgaccattca
ctaggctctccatttgctgatgtgaaagaagaagaggaggaggaggacaaagaggaggag
ctggatgaagatgaccttgaggatgaggtgacagcggaggatggtaggggggctgacact
gggatgctgaagagaccgtcagctgcagttccagattataaaacgctgagggatgagacc
cagcagatggagctcagagtcagagagttttataaagggacatggattctgcctgaggaa
gtggaggcgccgagtggaaacaaggtgacagcccaggaccagggcaagaaggaccctgtt
ctgccgctcgtggactctaatgctcagcacctcatccagaaacgaatcacagtggagaag
ctcaccagttgtctcagaaacattgttggtccactgcgtctcaccatgaatgacatctcc
actgacctgaacaggctggtcagaacattcaggttcaccaacacaaacatcatccacaaa
actccagagtggaccctcatagctgtggttcttctacatctgttgtcagaggtgtctctg
gtggtgcgagaggccttggagacgacagcctcggtgcagtatctgaagacgttgatggag
gaactctgtctacaggagcatgatctgttgaacttagtccggctgttcaaaaccccaaca
cactga
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