Lates calcarifer (barramundi perch): 108883720
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Entry
108883720 CDS
T04895
Name
(RefSeq) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108883720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcf03021
]
108883720
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
108883720
Prokaryotic type
Archaeal type
TFB
108883720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cyclin_N
Cyclin_C
KIF9
Sigma70_r4
RB_B
BRF2-like_C_cyclin_rpt
Motif
Other DBs
NCBI-GeneID:
108883720
NCBI-ProteinID:
XP_018532691
UniProt:
A0A4W6FF58
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All DBs
Position
LG4:17015936..17022397
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AA seq
318 aa
AA seq
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MASTSRGDALALPRVQCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNE
KALKDPSRVGDAQNPLLNGGDLTTMISKGTGAASFDEFGNSKYQNRRTMSSSDRAMLNAF
KEISTMADRINLPRNIIDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFK
EICAVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLGLPKQVQMAATFIARK
AVELDLVPGRSPISVAAAAIYMASQASAEKKTQKEIGDIAGVADVTIRQSYRLIYPRAAE
LFPPDFKFDTPVDKLPQL
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcaacaagccgcggagatgctctggcccttcccagagttcagtgtcccaaccac
cctgatgccatcctagtggaggactacagagcaggggacatgatttgccctgaatgcggc
cttgtcgtaggtgaccgtgtaatcgatgtgggctcagagtggaggacgttttctaatgag
aaagcccttaaagatccatccagagtgggagacgcccagaacccgctgctcaatggagga
gacctaaccaccatgatcagcaagggaacaggcgcagccagtttcgacgagttcggaaac
tcgaagtaccagaaccggcggaccatgagcagctctgaccgggccatgctcaatgccttt
aaagaaatcagcaccatggcggaccgcatcaacctgcccaggaacatcatagacagaaca
aacaacttattcaagcaagtttatgaacagaagagtctgaaggggcgagccaacgatgcc
atcgcctcagcctgtctctacatcgcctgcagacaagaaggagtaccaagaacatttaaa
gagatctgcgcagtttcccgtatttccaagaaggagattggtaggtgcttcaaactgatc
ctgaaggctctggagaccagcgtggacctcatcacaaccggagacttcatgtcccgcttc
tgctccaacctcggcctgcccaagcaggtgcagatggcggccaccttcatcgccaggaag
gccgtggagctcgacctggtgcccggcaggagccccatctctgtggccgcggcagccatt
tacatggcctcccaggcctctgcagagaagaagacccagaaagaaatcggagacattgct
ggtgttgcagacgttacgatcagacagtcgtaccgactcatctacccgcgagctgcagaa
cttttccctccagacttcaaattcgacacacctgttgacaagctgccccagctgtga
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